Job Description P39362 Confidence 99.31% Date Thu Jan 5 11:59:53 GMT 2012 Rank 80 Aligned Residues 175 % Identity 16% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.											.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.			.	.
Predicted Secondary structure												.																																					.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence												.																																					.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		M	I	L	H	P	S	L	A	S	A	.	N	P	L	H	Y	G	R	E	L	T	A	L	D	N	L	D	F	G	S	L	H	L	D	I	E	D	S	S	F	I	N	N	I	T	F	G	.	.	.	.	.	.	.	.	.	.	M	K	T	V	Q	A	V	A	R	Q	T	P	H	P	L	S	F	H	F	.	.	M	L
Query Conservation												.																																					.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence												.																																					.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		N	I	V	I	A	S	I	M	C	S	Y	N	K	N	D	W	M	E	L	S	R	K	A	E	A	S	G	A	D	A	L	E	L	N	L	S	C	P	H	G	M	G	E	R	G	M	G	L	A	C	G	Q	D	P	E	L	V	R	N	I	C	R	W	V	R	Q	A	V	Q	I	P	F	F	A	K	L	T	P	N	V
Template Known Secondary structure		S										S															T	T		S										S	S	G	G	G	G	T		T																						S	S								S		S
Template Predicted Secondary structure
Template SS confidence
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	P	Q	R	W	F	N	A	L	A	E	I	R	P	A	W	I	F	V	H	A	E	T	L	D	Y	P	S	E	T	L	T	E	I	R	H	T	G	A	R	A	G	L	V	F	N	P	A	T	P	I	D	A	W	R	Y	L	A	S	E	L	D	G	V	M	V	M	T	S	E	P	D	G	Q	G	Q	R	F	I
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Sequence		T	D	I	V	S	I	A	R	A	A	K	E	G	G	A	D	G	V	T	A	T	N	T	V	S	G	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	K	A	D	G	T	P	W	.	.	.	.	.	.	.	.	P	A	V	G	A	G	K	R	T	T	Y	G	G	V	S	G	T	A	I	R
Template Known Secondary structure		S													T		S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		T	T	S		B	S	.	.	.	.	.	.	.	.	S		B	T	T	T	T	B								S	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template SS confidence
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.																.	.	.	.	.	.	.	750	.									.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		P	S	M	C	E	K	I	Q	K	V	R	T	A	F	P	Q	T	E	C	W	A	D	G	G	I	.	T	L	A	A	A	Q	Q	L	A	A	A	G	A	Q	H	M	V	I	G	R	A	L	F	S	S	S
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		P	I	A	L	R	A	V	T	T	I	A	R	A	L	P	G	F	P	I	L	A	T	G	G	I	D	S	A	E	S	G	L	Q	F	L	H	S	G	A	S	V	L	Q	V	C	S	A	V	Q	N	Q	D
Template Known Secondary structure															S	T	T							S	S			S										T	T		S					S					T	S
Template Predicted Secondary structure
Template SS confidence
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions