Job Description P33371 Confidence 100.00% Date Thu Jan 5 11:52:10 GMT 2012 Rank 2 Aligned Residues 300 % Identity 22% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	L	L	A	P	M	E	G	V	L	D	S	L	V	R	E	L	L	T	E	V	N	D	Y	D	L	C	I	T	E	F	V	R	V	V	D	Q	L	L	P	V	K	V	F	H	R	I	C	P	E	L	Q	N	A	S	R	T	P	S	G	T	L	V	R	V	Q	L	L	G	Q	F	P	Q	W	L	A	E	N	A
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence		R	L	S	V	A	P	X	V	D	R	T	D	R	H	F	R	F	L	V	R	Q	V	S	L	G	V	R	L	Y	T	E	X	T	V	D	Q	A	V	L	R	G	N	R	E	R	.	.	.	.	.	.	.	.	L	L	A	F	R	P	E	E	H	P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A
Template Known Secondary structure		S							T	T	T		S												S	S	S	B														S					.	.	.	.	.	.	.	.						G	G	G		S								S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		A	R	A	V	E	L	G	S	W	G	V	D	L	N	C	G	C	P	S	K	T	V	N	G	S	G	G	G	A	T	L	L	K	D	P	E	L	I	Y	Q	G	A	K	A	M	R	E	A	V	P	A	H	L	P	V	S	V	K	V	R	L	G	W	.	.	.	D	S	G	E	K	K	F	E	I	A	D	A	V	Q
Query Conservation																																																																	.	.	.
Alig confidence																																																			.	.													.	.	.
Template Conservation																																																			.	.
Template Sequence		R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	.	.	R	V	P	V	T	V	K	X	R	L	G	L	E	G	K	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A
Template Known Secondary structure							T	T		S										S							T		G	G	G	G	G	G														T	T		.	.	S	S								S		B	T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.							.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																						.	.	.	.	.	.																.
Query SS confidence																						.	.	.	.	.	.																.
Query Sequence		Q	A	G	A	T	E	L	V	V	H	G	R	T	K	E	Q	G	Y	R	A	.	.	.	.	.	.	E	H	I	D	W	Q	A	I	G	D	I	R	Q	R	L	.	N	I	P	V	I	A	N	G	E	I	W	D	W	Q	S	A	Q	Q	C	M	A	I	S	G	C	D	A	V	M	I	G	R	G	A	L	N	I	P
Query Conservation																						.	.	.	.	.	.																.
Alig confidence																						.	.	.	.	.	.																.																					.	.
Template Conservation																																																																.	.
Template Sequence		E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	.	K	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P
Template Known Secondary structure			T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.	.	T	T	S	S					S							G
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		232	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		N	L	S	R	V	V	K	Y	N	E	P	.	R	M	P	W	P	E	V	V	A	L	L	Q	K	Y	T	R	L	E	K	Q	G	D	T	G	L	Y	H	V	A	R	I	K	Q	W	L	S	Y	L	R	K	E	Y	D	E	A	T	E	L	F	Q	H	V	R	V	L	N	N	S	P	D	I	A	R	A	I	Q	A	I
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		F	V	L	E	E	A	D	R	R	V	F	G	L	P	R	R	P	S	R	L	E	V	A	R	R	X	R	A	Y	L	E	E	E	V	L	K	G	T	P	P	W	A	V	L	R	H	X	L	N	L	F	R	G	R	P	K	G	R	L	W	R	R	L	L	S	E	G	R	S	L	Q	A	L	D	R	A	L	R	L	X
Template Known Secondary structure		G	G	G	T	T					T	S			S																					T	T	T			T					T	T	S	G	G	G	G	T	T	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		311	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		313	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions