Job Description P33371 Confidence 99.48% Date Thu Jan 5 11:52:10 GMT 2012 Rank 69 Aligned Residues 209 % Identity 12% Template c2zrvC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of sulfolobus shibatae isopentenyl2 diphosphate isomerase in complex with reduced fmn. Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure														.	.	.	.	.	.																																																														.
Query SS confidence														.	.	.	.	.	.																																																														.
Query Sequence		M	R	V	L	L	A	P	M	E	G	V	L	.	.	.	.	.	.	D	S	L	V	R	E	L	L	T	E	V	N	D	Y	D	L	C	I	T	E	F	V	R	V	V	D	Q	L	L	P	V	K	V	F	H	R	I	C	P	E	L	Q	N	A	S	R	T	P	S	G	T	L	V	R	V	Q	L	L	G	Q	F	.
Query Conservation														.	.	.	.	.	.																																																														.
Alig confidence														.	.	.	.	.	.													.															.	.	.	.	.	.	.																												.
Template Conservation																																.															.	.	.	.	.	.	.
Template Sequence		V	P	V	M	V	T	G	M	T	G	G	R	N	E	L	G	R	I	N	K	I	I	A	E	V	A	E	K	F	G	.	I	P	M	G	V	G	S	Q	R	V	A	I	E	K	.	.	.	.	.	.	.	A	E	A	R	E	S	F	A	I	V	R	K	V	A	P	T	I	P	I	I	A	N	L	G	M	P	Q	L
Template Known Secondary structure		S	S									S	S																		T	.															.	.	.	.	.	.	.	G	G	G	S											S	S	S								G	G	G	G
Template Predicted Secondary structure																																.															.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.								.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
				74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	P	Q	W	L	A	E	N	A	A	R	A	V	E	L	G	S	W	G	V	D	L	N	C	G	C	P	S	K	T	V	N	G	S	G	G	G	A	T	L	L	K	D	P	E	L	I	Y	Q	G	A	K	A	M	R	E	A	V	P	A	H	L	P	V	S	V	K	V	R	L	G	W	D	S	G	E	K	K	F
Query Conservation		.	.
Alig confidence		.	.																																					.	.	.	.																		.	.																		.	.
Template Conservation																																								.	.	.	.																		.	.																		.	.
Template Sequence		V	K	G	Y	G	L	K	E	F	Q	D	A	I	Q	M	I	E	A	D	A	I	A	V	H	L	N	P	A	Q	E	V	F	Q	P	E	G	E	P	.	.	.	.	E	Y	Q	I	Y	A	L	E	K	L	R	D	I	S	K	E	L	.	.	S	V	P	I	I	V	K	E	S	G	N	G	I	S	M	E	T	.	.
Template Known Secondary structure		T	T	T													T	T		S														S	S	S				.	.	.	.				T														.	.	S	S							S	S	S							.	.
Template Predicted Secondary structure																																								.	.	.	.																		.	.																		.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																								.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	A	D	A	V	Q	Q	A	G	A	T	E	L	V	V	H	G	R	T	K	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	R	A	E	H	I	D	W	Q	A	I	G	D	I	R	Q	R	L	N	I	P	V	I	A	N	G	E	I	W	D	W	Q	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	A	K	L	L	Y	S	Y	G	I	K	N	F	D	T	S	G	Q	G	G	T	N	W	I	A	I	E	M	I	R	D	I	R	R	G	N	W	K	A	E	S	A	K	N	F	L	D	W	G	V	P	T	A	A	S	I	M	E	V	R	Y	S	V	P	D	S	F	L	V	G	S	G	G	I	R	S	G	L	D
Template Known Secondary structure		.	.							T	T									B	T	S	B													T	T		T								T	T	T		S		B												S	T	T							S	S			S
Template Predicted Secondary structure		.	.
Template SS confidence
				204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	Q	C	M	A	I	S	G	C	D	A	V	M	I	G	R	G	A	L
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		A	A	K	A	I	A	L	.	G	A	D	I	A	G	M	A	L	P	V	L
Template Known Secondary structure									.	T		S
Template Predicted Secondary structure									.
Template SS confidence
		282	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions