Job Description P0ACP1 Confidence 88.20% Date Thu Jan 5 11:18:38 GMT 2012 Rank 414 Aligned Residues 196 % Identity 12% Template d3ckma1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.35

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		63	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		S	I	G	L	V	I	P	D	L	E	N	.	.	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D
Query Conservation													.	.
Alig confidence													.	.																																		.	.
Template Conservation																																																.	.
Template Sequence		Q	I	G	L	L	L	P	L	S	G	D	G	Q	I	L	G	T	T	I	Q	S	G	F	N	D	A	K	G	N	S	T	I	P	V	Q	V	F	D	T	S	X	N	S	V	Q	D	.	.	I	I	A	Q	A	K	Q	A	G	I	K	T	L	V	G	P	L	L	K	Q	N	L	D	V	I	L	A	D	P	A	Q	I
Template Known Secondary structure										S	S	T	T																T	T			S							T	T	T	S					.	.								T	T									S											G	G	G	G
Template Predicted Secondary structure																																																.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		P	F	P	I	V	A	L	D	R	A	L	D	R	.	.	.	.	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	Y
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.																																		.	.
Template Conservation																																																				.	.
Template Sequence		Q	G	X	D	V	L	A	L	N	A	T	P	N	S	R	A	I	P	Q	L	C	Y	Y	G	L	S	P	E	D	E	A	E	S	A	A	N	K	X	W	N	D	G	V	R	N	P	L	V	A	X	.	.	P	Q	N	D	L	G	Q	R	V	G	N	A	F	N	V	R	W	Q	Q	L	A	G	T	D	A	N	I	R
Template Known Secondary structure		T	T						S				T	T					T	T																						T	T			S						.	.		S	S																			S	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		Y	Y	N	L	P	A	D	V	T	Y	F	V	Q	E	.	.	.	N	N	S	N	T	T	A	L	Y	A	V	A	S	P	T	E	L	A	E	X	K	G	Y	L	T	N	I	V	P	N	L	A
Template Known Secondary structure				S	S	T	T									.	.	.	S		T	T																					T	T	T		T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.				.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions