Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP1
Confidence99.88%DateThu Jan 5 11:18:38 GMT 2012
Rank65Aligned Residues262
% Identity13%Templated1tjya_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90........ .100.........110.........120.........130.......
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Query Sequence  GRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIAC. SEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW
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Template Sequence  GSAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR
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   25....30.........40.........50.........60.........70.........80.........90.........100....
 
   138.140.........150... ......160.........170....... ..180.........190.........200.........210.
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Query Sequence  ANDPFPIVALDRALDR. . . EHFTSVVGADQDDAEMLAEELRKF. . . PAETVLYLGALPELSVSFLREQGFRTAWKDDPRE
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Template Sequence  AMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPG
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   105....110.........120.........130.........140.........150.........160.........170.........180....
 
   212..... ..220.........230.........240.........250.........260.........270........ .280......
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Query Sequence  VHFLYA. . NSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNEL. LDFLQCPV. .
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Template Sequence  WEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR. . . NNLAIVGFSTPNVMRPYVQRGTVK
Template Known Secondary structure 
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   185....190.........200.........210.........220.........230....... ..240.........250.........260.
 
   287..290.........300.........310.........320...
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Query Sequence  LAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKR
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Template Sequence  EFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPG
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   262.......270.........280.........290........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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