Job Description P0ACP1 Confidence 99.98% Date Thu Jan 5 11:18:38 GMT 2012 Rank 35 Aligned Residues 303 % Identity 13% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																														.	.																.
Query SS confidence																																														.	.																.
Query Sequence		T	A	S	Y	V	I	N	G	K	A	K	Q	Y	R	V	S	D	K	T	V	E	K	V	M	A	V	V	R	E	H	N	Y	H	P	N	A	V	A	A	G	L	R	A	G	.	.	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	.	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y
Query Conservation																																														.	.																.
Alig confidence												.	.	.	.	.	.	.	.	.						.	.																			.	.																.
Template Conservation												.	.	.	.	.	.	.	.	.						.	.
Template Sequence		G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I
Template Known Secondary structure												.	.	.	.	.	.	.	.	.						.	.										S						S	S			S	S												S	S																		T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.						.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.										40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		93	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure								.	.	.	.																																																					.	.	.	.	.	.	.
Query SS confidence								.	.	.	.																																																					.	.	.	.	.	.	.
Query Sequence		Q	L	L	I	A	C	.	.	.	.	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	.	.	.	.	.	.	.	L	D	R	E	H	F	T	S	V	V	G
Query Conservation								.	.	.	.																																																					.	.	.	.	.	.	.
Alig confidence								.	.	.	.																																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	Q	L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F
Template Known Secondary structure												T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	.	.	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		D	H	A	E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V
Template Known Secondary structure																		S		T	T									S	T	T																														S	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																								.	.											.
Query SS confidence																																								.	.											.
Query Sequence		Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	.	.	L	L	D	F	L	Q	C	P	V	L	.	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P
Query Conservation																																								.	.											.
Alig confidence																									.	.	.													.	.											.																											.	.
Template Conservation																									.	.	.																																																				.	.
Template Sequence		D	F	I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	.	.	P
Template Known Secondary structure		S					S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T				.	.
Template Predicted Secondary structure																									.	.	.																																																				.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.			.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	Y	S	G	D	F	E	I	V	T	K	A	D	S	P	E	R
Template Known Secondary structure		S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions