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Job DescriptionP0ACP1
Confidence99.92%DateThu Jan 5 11:18:38 GMT 2012
Rank59Aligned Residues268
% Identity13%Templated1gcaa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90 .........100.........110.........120.........130.........140.
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Query Sequence  SIGLVIPDLENTSYTRIANYLERQARQR. GYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDP
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Template Sequence  RIGVTIYKYDDNFMSVVRKAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ
Template Known Secondary structure  S
TT
TSTT
TT
TT
S

SSGGGT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   142.......150.. .......160.........170.........180 .........190.........200..
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Query Sequence  FPIVALDRALD. . . . . . . REHFTSVVGADQDDAEMLAEELRKFPAE. . . . . . . . . . . . TVLYLGALPELSVSFLREQGFR
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Template Sequence  NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGDLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEARTTYVV
Template Known Secondary structure  T

SS


T
TT


GGG
TT
SSS
STT
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   203......210.... .....220.........230.........240 .........250.........260.........270........
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Query Sequence  TAWKDDPREVHF. . LYANSYEREAAAQLFEKWLETHPMPQ. . ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNEL
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Template Sequence  KELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. . . KSSIPVFGVDALPE
Template Known Secondary structure  TT


TT
TSTTGGG

SSTT...
TTS

SB

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   164.....170.........180.........190.........200.........210.........220...... ...230.........240
 
   279280..... ....290.........300.........310...... ...320.........330...
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Query Sequence  LDFLQCP. . . VLAVAQRHRDVAERVLEIVLASLDEPRKPKP. . . . . . . GLTRIKRNLYRRGVLSR
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Template Sequence  ALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSE
Template Known Secondary structure  TSS
B

TTS
TTTTS



BTT



TTTGGG
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   241........250.........260.........270.........280.........290.........300.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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