Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP1
Confidence100.00%DateThu Jan 5 11:18:38 GMT 2012
Rank32Aligned Residues267
% Identity16%Templated1dbqa_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.20

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDP
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Template Sequence  KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRH
Template Known Secondary structure 
S
TTST

TT
TT
S
S


TTT
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   60.........70.........80.........90.........100.........110.........120.........130.........
 
   142.......150.........160. ........170.........180.........190.........200.........210.........220
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Query Sequence  FPIVALDRALDREHFTSVVG. ADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSY
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Template Sequence  IPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPA. . . . GRLAGFMKAMEEAMIKVPESWIVQGDF
Template Known Secondary structure  S

SS

SSS

TT

S



....TT



GGGB



S
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   140.........150.........160.........170.........180........ .190.........200.........210.....
 
   221........230.........240.........250.........260.........270.........280.........290.........300
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Query Sequence  EREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
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Template Sequence  EPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETA
Template Known Secondary structure  STSSS

SS
TT

TTTT


TTGGGSSS



S
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   222.......230.........240.........250.........260.........270.........280.........290.........300.
 
   301........310.........320.........330...
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Query Sequence  LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSR
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Template Sequence  FNMLLDRIVNKRE. EPQSIEVHPRLIERRSVAD
Template Known Secondary structure  S


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   302.......310.... .....320.........330...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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