Job Description P0ACP1 Confidence 99.95% Date Thu Jan 5 11:18:38 GMT 2012 Rank 49 Aligned Residues 254 % Identity 16% Template d1byka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.50

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N
Query Conservation
Alig confidence																																																																												.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		S	D	K	V	V	A	I	I	V	T	R	L	D	S	L	S	E	N	L	A	V	Q	T	M	L	P	A	F	Y	E	Q	G	Y	D	P	I	M	M	E	S	Q	F	S	P	Q	L	V	A	E	H	L	G	V	L	K	R	R	N	I	D	G	V	V	L	F	G	F	T	G	I	T	E	E	M	.	.	.	L	A	H
Template Known Secondary structure											S		T	T																			T									T	T														T	T	T										T	T			T	T	T	.	.	.	S	G	G
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		W	Q	S	S	L	V	L	L	A	R	D	A	K	G	F	.	.	A	S	V	C	Y	D	D	E	G	A	I	K	I	L	M	Q	R	L	Y	D	Q	G	H	R	N	I	S	Y	L	G	V	P	H	S	D	V	T	T	G	K	R	R	H	E	A	Y	L	A	F	C	K	A	H	K	L	H	P	V	A	A	L	P	G
Template Known Secondary structure		G	S	S	S					S	S			S	S		.	.																					T	T											T	T	S	T	T	T	T														T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R
Query Conservation
Alig confidence														.	.																													.	.	.
Template Conservation														.	.																													.	.	.
Template Sequence		L	A	M	K	Q	G	Y	E	N	V	A	K	.	.	V	I	T	P	E	T	T	A	L	L	C	A	T	D	T	L	A	L	G	A	S	K	Y	L	Q	E	Q	R	.	.	.	I	D	T	L	Q	L	A	S	V	G	N	T	P	L	M	K	F	L	H	P	E	I	V	T	V	D	P	G	Y	A	E	A	G	R	Q
Template Known Secondary structure		S									S	G	G	.	.	G			T	T							S	S														T	T	.	.	.			S																	T	T	S				B
Template Predicted Secondary structure														.	.																													.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P	G	L	T	R	I	K	R	N	L
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		A	A	C	Q	L	I	A	Q	V	T	G	R	S	E	.	.	P	Q	Q	I	I	I	P	A	T	L
Template Known Secondary structure											T	T	S			.	.									B
Template Predicted Secondary structure																.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions