Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP1
Confidence99.91%DateThu Jan 5 11:18:38 GMT 2012
Rank63Aligned Residues266
% Identity13%Templatec3o1hB_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:periplasmic protein tort; PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100 .........110.........120.........130.........
Predicted Secondary structure 










..












Query SS confidence 






































. .






































Query Sequence  RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE. . DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWAN
Query Conservation    
  
                                 ..                 
 
 
                 
Alig confidence 






































..






































Template Conservation    
 
  
 
    
  
  
    
   
  
         
   
   
   
    




                
Template Sequence  EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV
Template Known Secondary structure 
S


STT

SSTT
TT
S

SSTTTTTTTT
Template Predicted Secondary structure 























Template SS confidence 















































































   31........40.........50.........60.........70.........80.........90.........100.........110
 
   140.........150....... ..160.........170.........180..... ....190.........200.........210..
Predicted Secondary structure 












......






.










Query SS confidence 

















. . . . . .



























.


























Query Sequence  DPFPIVALDRALDREHFT. . . . . . SVVGADQDDAEMLAEELRKFPAETVLYL. GALPELSVSFLREQGFRTAWKDDPREV
Query Conservation       
            ...... 
                          .                           
Alig confidence 

















......



























.


























Template Conservation       

                  
  
    
      
          
            
  
            
Template Sequence  GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTKPVTTGFYEAIKNSDIHI
Template Known Secondary structure  TT


SS




TTTTTS


TS
TTS





SSSS
Template Predicted Secondary structure 




























Template SS confidence 















































































   111........120.........130.........140.........150.........160.........170.........180.........190
 
   213......220.........230.........240.........250.........260.........270.........280..... ....
Predicted Secondary structure 




























...
Query SS confidence 








































































. . .



Query Sequence  HFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCP. . . VLAV
Query Conservation                      
       

    
  
          
  

 

 


 
         
 ...



Alig confidence 























..























..




















...



Template Conservation                     

   ..    
      
     

   
 ..   
 


 
        
  
    

Template Sequence  VDSFWADNDKELQRNLVQRVIDMG. . NIDYIVGSAVAIEAAISELRSADK. . THDIGLVSVYLSHGVYRGLLRNKVLFAP
Template Known Secondary structure 

S
T
..

S
TS
..TTTSSS

TTTTS

B
Template Predicted Secondary structure 






..







..









Template SS confidence 















































































   195....200.........210........ .220.........230.........240.. .......250.........260.........270
 
   290.........300.........310.........320.........330...
Predicted Secondary structure 











Query SS confidence 











































Query Sequence  AQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSR
Query Conservation         
  

  
   
            
   

 
 
  
Alig confidence 























..

















Template Conservation   
     
  

      
 
   ..          

  

  
Template Sequence  TDKMVQQGRLSVMQAAHYLRHQPY. . EKQASPIIKPLTPKTLHD
Template Known Secondary structure 

TT


..
T




GGG

Template Predicted Secondary structure 






..






Template SS confidence 











































   271........280.........290.... .....300.........310..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions