Job Description P0ACP1 Confidence 93.89% Date Thu Jan 5 11:18:38 GMT 2012 Rank 144 Aligned Residues 200 % Identity 11% Template c3n0wA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc branched chain amino acid family transporter, PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution Resolution 1.88 Å

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		63	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure										.	.	.																						.	.	.	.	.	.	.																										.
Query SS confidence										.	.	.																						.	.	.	.	.	.	.																										.
Query Sequence		S	I	G	L	V	I	P	D	.	.	.	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	.	.	.	.	.	.	.	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	.	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H
Query Conservation										.	.	.																						.	.	.	.	.	.	.																										.
Alig confidence										.	.	.																						.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		T	L	G	V	L	T	D	X	S	S	V	Y	A	D	S	A	G	K	G	S	V	A	A	V	Q	L	A	I	E	D	V	G	G	K	A	L	G	Q	P	V	K	L	V	S	A	D	Y	Q	X	K	T	D	V	A	L	S	I	A	R	E	W	F	D	R	D	G	V	D	A	I	F	D	V	V	N	S	G	T	A	L
Template Known Secondary structure									S	S	S	T	T	T	T	T	S															T	T	T			T	T											T	T																S
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	.	.	.	.	.	.	.	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A
Query Conservation																										.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																																.	.
Template Conservation																																																																.	.
Template Sequence		A	I	N	N	L	V	K	D	K	K	K	L	A	F	I	T	A	A	A	A	D	Q	I	G	G	T	E	C	N	G	Y	G	I	G	F	L	Y	N	F	T	S	I	V	K	T	V	V	Q	A	Q	L	A	K	G	Y	K	T	W	F	L	X	L	.	.	P	D	A	A	Y	G	D	L	X	N	A	A	I	R	R	E
Template Known Secondary structure											T							S				T	T	T	T	T	T	T			S	S					S																	T	T									.	.		S	S
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		L	T	A	G	G	G	Q	I	V	G	S	V	R	F	P	F	E	T	Q	D	F	S	S	Y	L	L	Q	A	K	A	S	G	A	Q	.	L	I	V	S	T	S	G	G	A	A	N	I	N	I	X	K	Q	A	R	E	F	G	L	P	S	K
Template Known Secondary structure						T											T	T															T		S	.																					T	T		S		S
Template Predicted Secondary structure																																				.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions