Job Description P0ACP1 Confidence 90.89% Date Thu Jan 5 11:18:38 GMT 2012 Rank 324 Aligned Residues 200 % Identity 8% Template c3lopA_ PDB info PDB header:substrate binding protein Chain: A: PDB Molecule:substrate binding periplasmic protein; PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		63	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure													.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	G	L	V	I	P	D	L	E	N	.	.	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	.	.	.	.	.	.	.	.	.	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H
Query Conservation													.	.																	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	I	Q	S	L	P	L	S	G	S	Q	A	V	T	G	R	A	L	N	A	G	A	R	L	Y	F	D	W	L	N	L	N	G	G	I	N	G	E	T	I	R	L	V	A	R	D	D	E	Q	K	I	E	Q	T	V	R	N	V	R	D	X	A	R	V	D	N	P	V	A	L	L	T	V	V	G	T	A	N	V
Template Known Secondary structure									S	S	S	T	T																					T	T	T	B	T	T	B										T	T																S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		132	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure					.	.																			.	.	.	.	.
Query SS confidence					.	.																			.	.	.	.	.
Query Sequence		P	F	Y	.	.	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	.	.	.	.	.	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A
Query Conservation					.	.																			.	.	.	.	.
Alig confidence					.	.																			.	.	.	.	.																																					.	.
Template Conservation																																																																		.	.
Template Sequence		E	A	L	X	R	E	G	V	L	A	E	A	R	L	P	L	V	G	P	A	T	G	A	S	S	X	T	T	D	P	L	V	F	P	I	K	A	S	Y	Q	Q	E	I	D	K	X	I	T	A	L	V	T	I	G	V	T	R	I	G	V	L	Y	Q	E	.	.	D	A	L	G	K	E	A	I	T	G	V	E	R	T
Template Known Secondary structure							T	T						T					S		S				G	G	G	G	S		T	T					S																	T	T										T	.	.	T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P
Query Conservation
Alig confidence																																					.
Template Conservation																																					.
Template Sequence		L	K	A	H	A	L	A	I	T	A	X	A	S	Y	P	R	N	T	A	N	V	G	P	A	V	D	K	L	L	A	A	D	V	Q	A	.	I	F	L	G	A	T	A	E	P	A	A	Q	F	V	R	Q	Y	R	A	R	G	G	E	A	Q
Template Known Secondary structure				T	T	T				S							T	T	S													S			S		.					S															T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions