Job Description P0ACP1 Confidence 89.29% Date Thu Jan 5 11:18:38 GMT 2012 Rank 385 Aligned Residues 201 % Identity 7% Template c3lkbB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:probable branched-chain amino acid abc PDBTitle: crystal structure of a branched chain amino acid abc2 transporter from thermus thermophilus with bound valine Resolution 2.40 Å

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		63	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure													.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	G	L	V	I	P	D	L	E	N	.	.	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	.	.	.	.	.	.	.	.	.	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H
Query Conservation													.	.																	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	F	W	S	G	A	I	T	G	P	T	S	D	A	G	A	P	Y	G	A	A	V	E	D	Y	C	K	W	A	N	E	R	K	L	V	P	G	V	V	F	N	C	V	V	R	D	D	Q	Y	N	N	A	N	T	Q	R	F	F	E	E	A	V	D	R	F	K	I	P	V	F	L	S	Y	A	T	G	A	N	L
Template Known Secondary structure									S	S	S	T	T																						T	S	S	T	T											T	T																			S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	.	.	.	.	.	.	R	A	L	D	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																							.
Template Conservation																																																															.
Template Sequence		Q	L	K	P	L	I	Q	E	L	R	I	P	T	I	P	A	S	M	H	I	E	L	I	D	P	P	N	N	D	Y	I	F	L	P	T	T	S	Y	S	E	Q	V	V	A	L	L	E	Y	I	A	R	E	K	K	G	A	K	V	A	L	V	.	V	H	P	S	P	F	G	R	A	P	V	E	D	A	R	K	A	A
Template Known Secondary structure											T						S				G	G	G	T	S	S	S	S		T	T	B																						S	T	T							.			S	S					T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		R	E	L	G	L	Q	I	V	D	V	Q	E	V	G	S	G	N	L	D	N	T	A	L	L	K	R	F	E	Q	A	G	V	E	Y	V	V	H	Q	N	V	A	G	P	V	A	N	.	I	L	K	D	A	K	R	L	G	L	K	M	R
Template Known Secondary structure					T											T	T														T	T								S								.								T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions