Job Description P0ACP1 Confidence 99.65% Date Thu Jan 5 11:18:38 GMT 2012 Rank 71 Aligned Residues 259 % Identity 10% Template c3lftA_ PDB info PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a Resolution 1.35 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence		S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	.	.	.	.	.	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W
Query Conservation																																.	.	.	.	.
Alig confidence					.																											.	.	.	.	.
Template Conservation					.
Template Sequence		K	I	G	.	V	L	Q	F	V	S	H	P	S	L	D	L	I	Y	K	G	I	Q	D	G	L	A	E	E	G	Y	K	D	D	Q	V	K	I	D	F	X	N	S	E	G	D	Q	S	K	V	A	T	X	S	K	Q	L	V	A	N	G	N	D	L	V	V	G	I	A	T	P	A	A	Q	G	L	A	S	A	T	K
Template Known Secondary structure					.					S																			T	T			G	G	G									T	T													T	T	S	S		S						S												S
Template Predicted Secondary structure					.
Template SS confidence
		52	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	.	.	.	.	.	.	.	.	.	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																																	.
Template Conservation																																																											.
Template Sequence		D	L	P	V	I	X	A	A	I	T	D	P	I	G	A	N	L	V	K	D	L	K	K	P	G	G	N	V	T	G	V	S	D	H	N	P	A	Q	Q	Q	V	E	L	I	K	A	L	T	P	N	V	K	T	I	G	A	L	.	Y	S	S	S	E	D	N	S	K	T	Q	V	E	E	F	K	A	Y	A	E	K	A
Template Known Secondary structure		S	S						S		S		T	T	T	T	T	S		S		S	S				S	S																						T	T								.			T	T																		T
Template Predicted Secondary structure																																																											.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	C	P	V	L	A
Query Conservation
Alig confidence															.	.	.	.	.																																								.	.									.	.	.
Template Conservation															.	.	.	.	.																																								.	.									.	.	.
Template Sequence		G	L	T	V	E	T	F	A	V	P	S	T	N	.	.	.	.	.	E	I	A	S	T	V	T	V	X	T	S	K	V	D	A	I	W	V	P	I	D	N	T	I	A	S	G	F	P	T	V	V	S	S	N	Q	S	S	K	.	.	K	P	I	Y	P	S	A	T	.	.	.	A	X	V	E	V	G	G	L	A	S
Template Known Secondary structure		T									S	S	G	G	.	.	.	.	.	G									T	T	T		S						S							T								T	T	T	T		.	.						S	S		.	.	.				T	T	T
Template Predicted Secondary structure															.	.	.	.	.																																								.	.									.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	.	P	G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		V	V	I	D	Q	H	D	L	G	V	A	T	G	K	X	I	V	Q	V	L	K	G	A	K	P	A	D	T	P	V	N	V	F	S	T	G	K	S	V	I	N	K	K	I	A	Q
Template Known Secondary structure																						T	T			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions