Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP1
Confidence99.95%DateThu Jan 5 11:18:38 GMT 2012
Rank48Aligned Residues270
% Identity12%Templatec3l49D_
PDB info PDB header:transport proteinChain: D: PDB Molecule:abc sugar (ribose) transporter, periplasmic PDBTitle: crystal structure of abc sugar transporter subunit from2 rhodobacter sphaeroides 2.4.1
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   58.60.........70.........80.........90.........100.........110.........120.........130.......
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Query Sequence  AGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW
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Template Sequence  SLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK
Template Known Secondary structure 

TT
S


STT

TT


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   28.30.........40.........50.........60.........70.........80.........90.........100.......
 
   138.140.........150.........160.........170....... ..180.........190.........200......... 210.
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Query Sequence  ANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKF. . PAETVLYLGALPELSVSFLREQGFRTAWKDDP. . . . RE
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Template Sequence  INDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIE
Template Known Secondary structure  TT

S


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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
   212.......220.........230........ .240.........250.........260.........270....... ..280......
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Query Sequence  VHFLYANSYEREAAAQLFEKWLETHPM. . . PQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNE. . LLDFLQCPV
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Template Sequence  PELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAG
Template Known Secondary structure  S
B


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   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
   287..290.........300.........310.........320.........
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Query Sequence  LAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRG
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Template Sequence  AVAAQQPSEIGKLAVQNVARHLAGQEV. . KPFTFAPAVLITKE
Template Known Secondary structure 

TT


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S
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   268.270.........280.........290.... .....300........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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