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Job DescriptionP0ACP1
Confidence99.93%DateThu Jan 5 11:18:38 GMT 2012
Rank55Aligned Residues261
% Identity16%Templatec3ksmA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90......... 100.........110....... ..120.........130.........
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Query Sequence  SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS. . EDQPDNEMRCIEHLLQRQ. VDAIIVSTSLPPEHPFYQRWAN
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Template Sequence  KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYR
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   40.........50.........60.........70.........80.........90.........100.........110.........
 
   140........ .150.........160.........170... ......180.........190.........200........ .210..
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Query Sequence  DPFPIVALD. . RALDREHFTSVVGADQDDAEMLAEE. . . . LRKFPAETVLYLGALPELSVSFLREQGFRTAWKDD. PREV
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Template Sequence  ARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRI
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   120.........130.........140.........150.........160.........170.........180.........190.........
 
   213......220.........230.........240.........250.........260.........270.........280..... ....
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Query Sequence  HFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCP. . . VLAV
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Template Sequence  IAAPYAGDDRGAARSEXLRLLKETPTIDGLFTPNESTTIGALVAIRQSG. . XSKQFGFIGFDQTEELEAAXYAGEISNLV
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   200.........210.........220.........230.........240........ .250.........260.........270.......
 
   290.........300.........310.........320.......
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Query Sequence  AQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYR
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Template Sequence  VQNPEYXGYLAVQRALDLVRGKPI. . PAFTDTGVRLLQ
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   278.280.........290.........300. ........310...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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