Job Description P0ACP1 Confidence 100.00% Date Thu Jan 5 11:18:38 GMT 2012 Rank 2 Aligned Residues 329 % Identity 18% Template c3kjxD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Resolution 2.33 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	D	E	I	A	R	L	A	G	V	S	R	T	T	A	S	Y	V	I	N	G	K	A	K	Q	Y	R	V	S	D	K	T	V	E	K	V	M	A	V	V	R	E	H	N	Y	H	P	N	A	V	A	A	G	L	R	A	G	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		L	T	L	R	D	V	S	E	A	S	G	V	S	E	X	T	V	S	R	V	L	R	N	R	G	D	.	.	.	V	S	D	A	T	R	A	R	V	L	A	A	A	K	E	L	G	Y	V	P	N	K	I	A	G	A	L	A	S	N	R	V	N	L	V	A	V	I	I	P	S	L	S	N	X	V	F	P	E	V	L
Template Known Secondary structure				T									S									T	T			S		.	.	.			T	T	T	S											T										T	T	S	S			S							S		S	S	S	S	S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	S	V	V
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		T	G	I	N	Q	V	L	E	D	T	E	L	Q	P	V	V	G	V	T	D	Y	L	P	E	K	E	E	K	V	L	Y	E	X	L	S	W	R	P	S	G	V	I	I	A	G	L	E	H	S	.	E	A	A	R	A	X	L	D	A	A	G	I	P	V	V	E	I	X	D	S	D	G	K	P	V	D	A	X	V	G
Template Known Secondary structure									T	T	S	S									T	T														T	T			S							S				.	S								T		S	S									S	S			S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																														.																													.	.
Query SS confidence																														.																													.	.
Query Sequence		G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	.	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	Y	.	.	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P
Query Conservation																														.																													.	.
Alig confidence																														.																													.	.
Template Conservation
Template Sequence		I	S	H	R	R	A	G	R	E	X	A	Q	A	I	L	K	A	G	Y	R	R	I	G	F	X	G	T	K	X	P	L	D	Y	R	A	R	K	R	F	E	G	F	T	E	V	L	G	K	N	G	V	E	I	E	D	R	E	F	Y	S	G	G	S	A	L	A	K	G	R	E	X	T	Q	A	X	L	E	R	S	P
Template Known Secondary structure																		T	T			S						S	S	T	T	T																		T	T				S							S																			T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	D	F	L	Y	Y	S	N	D	X	I	A	A	G	G	L	L	Y	L	L	E	Q	G	I	D	I	P	G	Q	I	G	L	A	G	F	N	N	V	E	L	L	Q	G	L	P	R	K	L	A	T	X	D	A	C	R	L	E	I	G	R	K	A	A	E	I	I	A	K	R	L	E	D	P	E	A	E	I	E	T
Template Known Secondary structure		T							S	S														T	T			T	T	T	T						S	B			G	G	G	G	G	S	S	S			B			B																					G	G	G
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	T	L	E	P	K	I	S	Y	G	D	T	L	K	R
Template Known Secondary structure													S	S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions