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Job DescriptionP0ACP1
Confidence99.91%DateThu Jan 5 11:18:38 GMT 2012
Rank62Aligned Residues255
% Identity17%Templatec3h75A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:periplasmic sugar-binding domain protein; PDBTitle: crystal structure of a periplasmic sugar-binding protein from the2 pseudomonas fluorescens
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120... ......130........
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Query Sequence  TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIV. . STSLPPEHPFYQRWA
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Template Sequence  TSVVFLNPGNSTETFWVSYSQFXQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLXLVNEQYVAPQILRLSQ
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   52.......60.........70.........80.........90.........100.........110.........120.........130.
 
   139140.........150..... ....160.........170.........180 .........190.........200.........
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Query Sequence  NDPFPIVALDRALDREH. . FTSVVGADQDDAEMLAEELRKFPAE. . . . . . . TVLYLGALPELSVSFLREQGFRTAWKDDP
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Template Sequence  GSGIKLFIVNSPLTLDQRWIGSXVGDDEEAGYRXLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHP
Template Known Secondary structure  TS

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   132.......140.........150.........160.........170.........180.........190.........200.........210.
 
   210. ........220.........230.........240.........250.........260.........270....... ..280......
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Query Sequence  RE. VHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNE. . LLDFLQCPV
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Template Sequence  QVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEXALGAXQAARELGRKPGTDLLFSGVNSSPEALQALIDGKL
Template Known Secondary structure  T
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   212.......220.........230.........240.........250.........260.........270.........280.........290.
 
   287..290.........300.........310.....
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Query Sequence  LAVAQRHRDVAERVLEIVLASLDEPRKPK
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Template Sequence  SVLEAGHFTLGGWALVALHDDALGLDARR
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GGGTT

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   292.......300.........310.........320
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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