Job Description P0ACP1 Confidence 83.80% Date Thu Jan 5 11:18:38 GMT 2012 Rank 483 Aligned Residues 205 % Identity 13% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90											.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.											.
Query Sequence		S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	.	.	.	.	.	.	.	.	.	.	G	Y	Q	L	L	I	A	C	S	E	.	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H
Query Conservation																														.	.	.	.	.	.	.	.	.	.											.
Alig confidence																														.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		R	F	G	G	I	F	E	Y	V	E	S	G	P	M	G	A	E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P	S	H	S	S	S	A	N
Template Known Secondary structure											T	T	S	S																			S	S	S	S	S	S												T	T																		S						S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	.	.	.	.	.	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.																																		.	.	.
Template Conservation																																																													.	.	.
Template Sequence		A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T	R	W	K	H	Q	V	S	D	N	K	D	S	F	Y	V	S	L	Y	P	D	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	.	.	.	Y	D	D	S	T	G	L	I	R	L	Q	E	L	I	K	A	P	S
Template Known Secondary structure										T	T			B				S						S	S					S					S	B		T	T	T												T	T		S						.	.	.		S	S	T						S					T	G	G	G
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T
Query Conservation
Alig confidence																			.	.
Template Conservation																			.	.
Template Sequence		R	Y	N	L	R	L	K	I	R	Q	L	P	A	D	T	K	D	.	.	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G	M	M	T	E	Y	Y	H	Y	I	F	T
Template Known Secondary structure		T	S	S										S	S	G	G	G	.	.											T	T								S																T			S	T	T
Template Predicted Secondary structure																			.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions