Job Description P0ACP1 Confidence 83.07% Date Thu Jan 5 11:18:38 GMT 2012 Rank 489 Aligned Residues 206 % Identity 11% Template c3h5lB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative branched-chain amino acid abc PDBTitle: crystal structure of a putative branched-chain amino acid2 abc transporter from silicibacter pomeroyi Resolution 1.70 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90										.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.
Predicted Secondary structure																					.	.															.	.	.	.	.	.	.	.	.													.															.
Query SS confidence																					.	.															.	.	.	.	.	.	.	.	.													.															.
Query Sequence		A	G	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	.	.	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	.	.	.	.	.	.	.	.	.	G	Y	Q	L	L	I	A	C	S	E	D	Q	.	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	.	Q	V	D	A	I	I	V	S
Query Conservation																					.	.															.	.	.	.	.	.	.	.	.													.															.
Alig confidence																					.	.															.	.	.	.	.	.	.	.	.													.															.
Template Conservation
Template Sequence		S	S	D	P	V	V	I	G	C	P	A	P	L	T	G	I	V	A	A	D	G	I	E	F	Q	R	G	I	Q	M	A	A	D	E	I	N	A	V	G	G	I	L	G	R	P	I	E	L	V	F	A	D	T	Q	S	K	G	V	D	V	V	I	Q	S	A	Q	R	L	I	D	R	D	N	A	S	A	L	I	A	G
Template Known Secondary structure			S	S											S	S	T	T																					T	T	T	B	T	T	B										T	T																T	T			S					S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.												.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Query Sequence		T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	.	.	.	.	.	.	.	.	.	.	.	R	A	L	D	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	.	.	.	.	.	.	.	.	K	F	P	A	E	T	V	L	Y	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	N	L	E	N	G	T	A	L	H	D	V	A	A	D	A	G	V	I	A	M	H	A	N	T	V	A	V	H	D	E	M	V	K	S	D	P	D	R	Y	W	G	T	F	Q	Y	D	P	P	E	T	L	Y	G	G	G	F	L	K	F	L	K	D	I	E	D	N	G	E	F	S	R	P	N	N	K	I	A	I	I
Template Known Secondary structure				S	S		S											T																				T	T	T		T	T				S	S			T																	T	T	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	T	G	P	G	I	Y	S	V	N	I	A	N	A	I	R	D	G	A	G	E	Y	G	Y	D	V	S	L	F	E	T	V	A	I	P	V	S	D	W	G	P	T	L	A	K	L	R	A	D	P	P	A	V	I	V	V	T	H	F	Y	P	Q	D	Q	A	L	F	M	N	Q	F	M	T	D	P	T	N	S	L
Template Known Secondary structure		.	.			S	S														G	G	G	G	T											S	S		S												S			S																				T	T	S			S
Template Predicted Secondary structure		.	.
Template SS confidence
				199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions