Job Description P0ACP1 Confidence 99.94% Date Thu Jan 5 11:18:38 GMT 2012 Rank 54 Aligned Residues 269 % Identity 10% Template c3gbvB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative laci-family transcriptional regulator; PDBTitle: crystal structure of a putative laci transcriptional regulator from2 bacteroides fragilis Resolution 2.20 Å

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		60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure												.																									.	.	.	.
Query SS confidence												.																									.	.	.	.
Query Sequence		R	T	R	S	I	G	L	V	I	P	.	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	.	.	.	.	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y
Query Conservation												.																									.	.	.	.
Alig confidence												.																									.	.	.	.
Template Conservation
Template Sequence		K	K	Y	T	F	A	C	L	L	P	K	H	L	E	G	E	Y	W	T	D	V	Q	K	G	I	R	E	A	V	T	T	Y	S	D	F	N	I	S	A	N	I	T	H	Y	D	P	Y	D	Y	N	S	F	V	A	T	S	Q	A	V	I	E	E	Q	P	D	G	V	X	F	A	P	T	V	P	Q	Y	T	K	G	F
Template Known Secondary structure															T	T	S																T	G	G	G											T	T																		S								S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																							.	.																											.	.	.	.	.	.
Query SS confidence																							.	.																											.	.	.	.	.	.
Query Sequence		Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	.	.	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	.	.	.	.	.	.	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K
Query Conservation																							.	.																											.	.	.	.	.	.
Alig confidence																							.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	A	L	N	E	L	G	I	P	Y	I	Y	I	D	S	Q	I	K	D	A	P	P	L	A	F	F	G	Q	N	S	H	Q	S	G	Y	F	A	A	R	X	L	X	L	L	A	V	N	D	R	E	I	V	I	F	R	K	I	H	E	G	V	I	G	S	N	Q	Q	E	S	R	E	I	G	F	R	Q	Y	X	Q
Template Known Secondary structure									T							S	S			T	T	S			S																						S	T	T		S									B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		D	D	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	.	.	.	Q
Query Conservation																																																																														.	.	.
Alig confidence																																																						.	.	.	.																					.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		E	H	H	P	A	C	N	I	L	E	L	N	L	H	A	D	L	E	D	S	R	X	L	D	D	F	F	R	E	H	P	D	V	K	H	G	I	T	F	N	S	K	V	Y	I	I	G	E	Y	L	Q	Q	.	.	.	.	R	R	K	S	D	F	S	L	I	G	Y	D	L	L	E	R	N	V	T	C	L	K	E	G
Template Known Secondary structure					T	T	S									T	T															T	T							S	S	S		T										.	.	.	.	T	T			S							S												T
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P	G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		T	V	S	F	L	I	A	Q	Q	P	E	L	Q	G	F	N	S	I	K	T	L	C	D	H	L	I	F	R	K	E	.	V	A	C	T	N	Y	X	P	I	D	L	L	T	K	E	N	I	D	Y
Template Known Secondary structure		S																									T	S				.			S											T	T	T	G	G	G
Template Predicted Secondary structure																																.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions