Job Description P0ACP1 Confidence 99.92% Date Thu Jan 5 11:18:38 GMT 2012 Rank 58 Aligned Residues 269 % Identity 12% Template c2rjoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein; PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans Resolution 2.05 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence		T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	.	.	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence		Q	T	T	L	A	C	S	F	R	S	L	T	N	P	Y	Y	T	A	F	N	K	G	A	Q	S	F	A	K	S	V	G	L	P	Y	V	P	L	T	T	E	G	S	S	E	K	G	I	A	D	I	R	A	L	L	Q	K	T	G	G	N	L	V	L	N	V	D	P	N	D	S	A	D	A	R	V	I	V	E	A	C
Template Known Secondary structure										S		T	T	S																		T									T	T																T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	.	.	.	.	.	.	.	.	.	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	.	.	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D
Query Conservation																					.	.	.	.	.	.	.	.	.																					.	.
Alig confidence																					.	.	.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		S	K	A	G	A	Y	V	T	T	I	W	N	K	P	K	D	L	H	P	W	D	Y	N	P	N	Y	V	A	H	L	S	Y	D	G	V	A	Y	G	E	E	T	A	T	Q	L	F	K	S	X	G	G	K	G	G	V	V	A	L	G	G	I	F	S	N	V	P	A	I	E	R	K	A	G	L	D	A	A	L	K	K
Template Known Secondary structure					T							S				T	T			G	G	G	G	T	T	T																								T	T	T											T	T																	T
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		208		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure			.																									.																																																				.	.
Query SS confidence			.																									.																																																				.	.
Query Sequence		D	.	P	R	E	V	H	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	.	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	.	.
Query Conservation			.																									.																																																				.	.
Alig confidence			.																									.																															.	.																				.	.
Template Conservation																																																											.	.
Template Sequence		F	P	G	I	Q	L	L	D	F	Q	V	A	D	W	N	S	Q	K	A	F	P	I	X	Q	A	W	X	T	R	F	N	S	K	I	K	G	V	W	A	A	N	D	D	X	A	L	G	A	I	E	A	L	R	A	E	G	L	.	.	A	G	Q	I	P	V	T	G	X	D	G	T	Q	P	G	L	V	A	I	K	S
Template Known Secondary structure			T	T										T	T																	G	G	G							S	S														T	T		.	.	B	T	T	B					S	B											T
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
			284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure		.																																.	.	.	.	.
Query SS confidence		.																																.	.	.	.	.
Query Sequence		.	C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	.	.	.	.	.	K	P	G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L
Query Conservation		.																																.	.	.	.	.
Alig confidence		.																																.	.	.	.	.
Template Conservation
Template Sequence		G	E	L	V	A	S	V	D	W	D	P	F	W	L	G	G	I	G	L	S	X	G	L	Q	A	K	E	K	K	I	D	L	A	T	L	P	K	D	R	R	E	S	F	C	T	A	T	F	V	T	K	T	N	V
Template Known Secondary structure		T	S			B																						T	T		S		G	G	G	S		G	G	G	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions