Job Description P0ACP1 Confidence 100.00% Date Thu Jan 5 11:18:38 GMT 2012 Rank 31 Aligned Residues 266 % Identity 18% Template c2qu7B_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus Resolution 2.30 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A	N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N
Query Conservation
Alig confidence													.																																																																.	.	.
Template Conservation													.																																																																.	.	.
Template Sequence		R	S	N	I	I	A	F	I	V	P	D	.	Q	N	P	F	F	T	E	V	L	T	E	I	S	H	E	C	Q	K	H	H	L	H	V	A	V	A	S	S	E	E	N	E	D	K	Q	Q	D	L	I	E	T	F	V	S	Q	N	V	S	A	I	I	L	V	P	V	K	S	K	F	Q	M	K	R	.	.	.	E	W
Template Known Secondary structure											S	S	.																	G	G	G	T									T	T															T	T									S	S	S	S					G	.	.	.	G	G
Template Predicted Secondary structure													.																																																																.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	S	V	V	G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	P	I	M	T	L	D	R	E	L	E	S	T	S	L	P	S	I	T	V	D	N	E	E	A	A	Y	I	A	T	K	R	V	L	E	S	T	C	K	E	V	G	L	L	L	A	N	P	N	I	S	T	T	I	G	R	K	N	G	Y	N	K	A	I	S	E	F	D	L	N	V	N	P	S	L	I	H	Y
Template Known Secondary structure		T	T	S						S	S			T	T																							T	T	T			S								T	T	S																	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
				214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	F	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P	M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	C	P	V	L	A	V	A	Q
Query Conservation		.	.
Alig confidence		.	.																								.	.
Template Conservation																											.	.
Template Sequence		S	D	Q	Q	L	G	T	N	A	Q	I	Y	S	G	Y	E	A	T	K	T	L	L	S	K	G	.	.	I	K	G	I	V	A	T	N	H	L	L	L	L	G	A	L	Q	A	I	K	E	S	E	K	E	I	K	K	D	V	I	I	V	G	F	D	D	S	Y	W	N	E	I	Y	T	P	K	L	T	V	I	S	Q
Template Known Secondary structure				S	S		S																		T	T	.	.								S														S	S			B	T	T	T	B						S								S	S	S
Template Predicted Secondary structure																											.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P	G	L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S	R	S
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		P	V	K	E	M	G	Q	V	A	A	K	M	I	Y	K	L	I	K	G	K	D	V	T	S	.	.	.	I	K	L	S	T	K	L	I	I	R	E	S	C	S	F	N
Template Known Secondary structure																			T	T						.	.	.											S	T	T	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions