Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP1
Confidence99.96%DateThu Jan 5 11:18:38 GMT 2012
Rank45Aligned Residues267
% Identity17%Templatec2fn9A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:ribose abc transporter, periplasmic ribose-binding protein; PDBTitle: thermotoga maritima ribose binding protein unliganded form
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
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Query Sequence  RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDP
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Template Sequence  GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEA
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S
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TT
TT
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S
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   142.......150.. .......160.........170.........180. ........190.........200.........
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Query Sequence  FPIVALDRALD. . . REHFTSVVGADQDDAEMLAEELRKFPAET. . . . . . . . VLYLGALPELSVSFLREQGFRTAWKDDP.
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Template Sequence  GIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPE
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   210.........220.........230.........240.........250.........260.........270..... ....280........
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Query Sequence  REVHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGD. NELLDFLQCPVLA
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Template Sequence  FKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVAT
Template Known Secondary structure 
TT

TT

SSTT
TT


B

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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   289290.........300.........310.........320.........
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Query Sequence  VAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRG
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Template Sequence  IMQFPKLMARLAVEWADQYLRG. ERSFPEIVPVTVELVTRE
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   242.......250.........260... ......270.........280.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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