Job Description P0ACP1 Confidence 89.71% Date Thu Jan 5 11:18:38 GMT 2012 Rank 374 Aligned Residues 83 % Identity 13% Template c2e1cA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	D	E	I	A	R	L	A	G	V	S	R	T	T	A	S	Y	V	I	N	G	K	A	K	Q	Y	R	V	S	D	K	T	V	E	K	V	M	A	V	V	R	E	H	N	Y	H	P	N	A	V	A	A	G	L	R	A	G	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		A	P	L	R	E	I	S	K	I	T	G	L	A	E	S	T	I	H	E	R	I	R	K	L	R	E	S	G	V	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	T	A	I	I	D	P	E	A	L	G	Y	S	M	L	A	F	I	L	V	K	V	K	A	G	K	.	.	.	.	.	.	.	Y
Template Known Secondary structure												T	S															T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G	G	T													T	T		.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.															.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.								100
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	V	A	S	N	L	A	K	Y	P	E	I	V	E	V	Y	E	T	T	G	D	Y	D
Template Known Secondary structure										T	S	T	T								S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions