Job Description P0ACP1 Confidence 100.00% Date Thu Jan 5 11:18:38 GMT 2012 Rank 1 Aligned Residues 327 % Identity 22% Template c1zvvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex Resolution 2.98 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	L	D	E	I	A	R	L	A	G	V	S	R	T	T	A	S	Y	V	I	N	G	K	A	K	Q	Y	R	V	S	D	K	T	V	E	K	V	M	A	V	V	R	E	H	N	Y	H	P	N	A	V	A	A	G	L	R	A	G	R	T	R	S	I	G	L	V	I	P	D	L	E	N	T	S	Y	T	R	I	A
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		V	T	I	Y	D	V	A	R	E	A	S	V	S	M	A	T	V	S	R	V	V	N	G	N	P	N	.	.	.	V	K	P	S	T	R	K	K	V	L	E	T	I	E	R	L	G	Y	R	P	N	A	V	A	R	G	L	A	S	K	K	T	T	T	V	G	V	I	I	P	D	I	S	N	I	F	Y	A	E	L	A
Template Known Secondary structure		S		S							T	T	S											T		S		.	.	.	S																T													T			S							S		T	T	S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	L	E	R	Q	A	R	Q	R	G	Y	Q	L	L	I	A	C	S	E	D	Q	P	D	N	E	M	R	C	I	E	H	L	L	Q	R	Q	V	D	A	I	I	V	S	T	S	L	P	P	E	H	P	F	Y	Q	R	W	A	N	D	P	F	P	I	V	A	L	D	R	A	L	D	R	E	H	F	T	S	V	V
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		R	G	I	E	D	I	A	S	M	Y	K	Y	N	I	I	L	S	N	S	D	Q	N	Q	D	K	Q	L	H	L	L	N	N	M	L	G	K	Q	V	D	G	I	I	F	M	S	G	N	V	T	.	E	E	H	V	E	E	L	K	K	S	P	V	P	V	V	L	A	A	S	I	E	S	T	N	Q	I	P	S	V	T
Template Known Secondary structure											T	T									T	T																T		S							S				.								T	T		S	S						S				T	T			S
Template Predicted Secondary structure																																																			.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																						.	.
Query SS confidence																																			.																						.	.
Query Sequence		G	A	D	Q	D	D	A	E	M	L	A	E	E	L	R	K	F	P	A	E	T	V	L	Y	L	G	A	L	P	E	L	S	V	.	S	F	L	R	E	Q	G	F	R	T	A	W	K	D	D	P	R	E	V	H	F	.	.	L	Y	A	N	S	Y	E	R	E	A	A	A	Q	L	F	E	K	W	L	E	T	H	P
Query Conservation																																			.																						.	.
Alig confidence																																			.																						.	.
Template Conservation
Template Sequence		I	D	Y	E	Q	A	A	F	D	A	V	Q	S	L	I	D	S	G	H	K	N	I	A	F	V	S	G	T	L	E	E	P	I	N	H	A	K	K	V	K	G	Y	K	R	A	L	T	E	S	G	L	P	V	R	D	S	Y	I	V	E	G	D	Y	T	Y	D	S	G	I	E	A	V	E	K	L	L	E	E	D	E
Template Known Secondary structure																		T	T									S		T	T	S					T	T													T					T	T	S						S	S													S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	Q	A	L	F	T	T	S	F	A	L	L	Q	G	V	M	D	V	T	L	R	R	D	G	K	L	P	S	D	L	A	I	A	T	F	G	D	N	E	L	L	D	F	L	Q	C	P	V	L	A	V	A	Q	R	H	R	D	V	A	E	R	V	L	E	I	V	L	A	S	L	D	E	P	R	K	P	K	P	G
Query Conservation
Alig confidence																																																																														.
Template Conservation																																																																														.
Template Sequence		K	P	T	A	I	F	V	G	T	D	E	M	A	L	G	V	I	H	G	A	Q	D	R	G	L	N	V	P	N	D	L	E	I	I	G	F	D	N	T	R	L	S	T	M	V	R	P	Q	L	T	S	V	V	Q	P	M	Y	D	I	G	A	V	A	M	R	L	L	T	K	Y	M	N	K	E	T	V	.	D	S	S
Template Known Secondary structure				S					S	S														T	T			T	T	T	T										T	T	T	T	T	S	S	S																									T					.	S		S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	I	K	R	N	L	Y	R	R	G	V	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	E	L	P	H	R	I	E	F	R	Q	S	T	K
Template Known Secondary structure		S											T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions