Phyre 2 alignment of P09053 with d2z67a1

Job Description P09053
Confidence 99.79% Date Thu Jan 5 11:01:50 GMT 2012

Rank 223 Aligned Residues 311

% Identity 11% Template d2z67a1

SCOP info PLP-dependent transferase-like PLP-dependent transferases SepSecS-like

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence	A	L	T	N	K	I	L	E	S	F	F	K	Q	L	G	L	N	V	H	A	I	A	T	P	I	S	T	G	X	S	I	S	L	C	L	S	A	A	R	K	K	Y	G	S	N	V	V	I	Y	P	Y	A	.	.	.	.	.	.	S	H	K	S	P	I	K	A	V	S	F	V	G	X	N	X	R	L	V	E	T	V
Template Known Secondary structure														T	T									S	S																												.	.	.	.	.	.												T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.							.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

	158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	.	.	.	.	.	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E
Query Conservation																						.	.	.	.	.
Alig confidence			.	.																		.	.	.	.	.																				.	.	.
Template Conservation			.	.																																										.	.	.
Template Sequence	L	D	.	.	G	D	R	V	Y	V	P	V	E	D	I	E	N	A	I	K	K	E	I	E	L	G	N	R	P	C	V	L	S	T	L	T	F	F	P	P	R	N	S	D	D	.	.	.	I	V	E	I	A	K	I	C	E	N	Y	D	I	P	H	I	I	N	G	A	Y	A	I	Q	N	N	Y	Y	L	E	K	L
Template Known Secondary structure			.	.	T	T																			T	T									S	S			T	T	B					.	.	.												T								T	T	T	T	T
Template Predicted Secondary structure			.	.																																										.	.	.
Template SS confidence
	187	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	.	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y
Query Conservation																															.
Alig confidence																															.																																	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence	K	K	A	F	K	Y	R	V	D	A	V	V	S	S	S	D	K	N	L	L	T	P	I	G	G	G	L	V	Y	S	T	D	A	E	F	I	K	E	I	S	L	S	Y	P	G	R	A	S	A	T	P	V	V	N	T	L	V	S	L	L	S	X	G	.	.	.	.	.	S	K	N	Y	L	E	L	V	K	N	Q	K
Template Known Secondary structure					T	S			S														S	S							S										T	T	S		S		B		S															.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330	.	.	.	.	.	.

	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.
Query SS confidence																																																						.	.	.	.
Query Sequence	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	.	.	.	.	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M
Query Conservation																																																						.	.	.	.
Alig confidence																																			.	.	.																	.	.	.	.
Template Conservation																																			.	.	.
Template Sequence	N	S	K	K	L	L	D	E	L	L	N	D	L	S	K	K	T	G	G	K	F	L	D	V	E	S	P	I	A	S	C	I	S	V	.	.	.	N	S	D	P	V	E	I	A	A	K	L	Y	N	L	R	V	T	G	P	R	G	I	K	K	T	D	H	F	G	N	C	Y	L	G	T	Y	T	H	D	Y	I	V	X
Template Known Secondary structure																	S	S			B						S	S							.	.	.	S	S												T	T			S						T	T						T		S	S			S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
	337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

	388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	A	A	I	G	V	R	T	E	D	I	V	N	S	V	S	K	L	E	K
Template Known Secondary structure				T	T															T
Template Predicted Secondary structure
Template SS confidence
	414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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