Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 24 Aligned Residues 362 % Identity 17% Template d1m7ya_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.60

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.																										.	.
Query SS confidence																																										.	.	.	.	.	.	.																										.	.
Query Sequence		R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	.	.	.	.	.	.	.	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	.	.	W	D	I	E	P	Q
Query Conservation																																										.	.	.	.	.	.	.																										.	.
Alig confidence															.	.	.																									.	.	.	.	.	.	.																										.	.
Template Conservation															.	.	.
Template Sequence		N	T	N	G	I	I	Q	M	G	L	A	E	N	.	.	.	Q	L	C	F	D	L	L	E	S	W	L	A	K	N	P	E	A	A	A	F	K	K	N	G	E	S	I	F	A	E	L	A	L	F	Q	D	Y	H	G	L	P	A	F	K	K	A	M	V	D	F	M	A	E	I	R	G	N	K	V	T	F	D	P	N
Template Known Secondary structure			T	T	S	B				S	S				.	.	.		S														T	G	G	G	T			T	T													T	T																	T	T	T	S	S				G	G
Template Predicted Secondary structure															.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	.	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G
Query Conservation																																																			.
Alig confidence																											.	.	.	.	.	.																			.									.	.	.
Template Conservation																											.	.	.	.	.	.																												.	.	.
Template Sequence		H	L	V	L	T	A	G	A	T	S	A	N	E	T	F	I	F	C	L	A	D	P	G	E	A	.	.	.	.	.	.	V	L	I	P	T	P	Y	Y	P	G	F	D	R	D	L	K	W	R	T	G	V	E	I	V	P	I	H	.	.	.	C	T	S	S	N	G	F	Q	I	T	E	T	A	L	E	E	A	Y	Q
Template Known Secondary structure		G																					T	T			.	.	.	.	.	.						S			T	T					T	T	T	T	T									.	.	.			G	G	G	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.																												.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
								178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	.	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.																																																.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	E	K	R	N	L	R	V	K	G	V	L	V	T	N	P	S	N	P	L	G	T	T	M	T	R	N	E	L	Y	L	L	L	S	F	V	E	D	K	G	I	H	L	I	S	D	E	I	Y	S	G	T	A	F	S	S	P	S	F	I	S	V	M	E	V	L	K	D	R	N	C	D	E	N	S	E	V	W	Q
Template Known Secondary structure						T	T										S	S		T	T	T																				T								T	T	G	G	G			S	S	S									T	T	T	T	T		S	S	S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		N	I	V	L	C	M	S	L	S	K	L	G	L	.	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I
Query Conservation															.
Alig confidence															.																											.
Template Conservation																																										.
Template Sequence		R	V	H	V	V	Y	S	L	S	K	D	L	G	L	P	G	F	R	V	G	A	I	Y	S	N	D	D	M	V	V	A	A	A	T	K	M	S	S	F	G	.	L	V	S	S	Q	T	Q	H	L	L	S	A	M	L	S	D	K	K	L	T	K	N	Y	I	A	E	N	H	K	R	L	K	Q	R	Q	K	K	L	V
Template Known Secondary structure		G							S	S	S	S	S			G	G	G								S												G	G	G	S	.
Template Predicted Secondary structure																																										.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																				.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.
Query Sequence		A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	.	.	.	.	.	.	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V
Query Conservation																																				.	.	.	.	.	.
Alig confidence							.	.	.	.																										.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation							.	.	.	.																																																				.	.	.	.	.	.	.
Template Sequence		S	G	L	Q	K	.	.	.	.	S	G	I	S	C	L	N	G	N	A	G	L	F	C	W	V	D	M	R	H	L	L	R	S	N	T	F	E	A	E	M	E	L	W	K	K	I	V	Y	E	V	H	L	N	I	S	P	G	S	S	C	.	.	.	.	.	.	.	H	C	T	E	P	G	W	F	R	V	C	F	A
Template Known Secondary structure						T	.	.	.	.	T	T								S	S	S							G	G	G	S	S	S	S	S														T	S							G	G	G	G	.	.	.	.	.	.	.	T		S	S	T	T							S
Template Predicted Secondary structure							.	.	.	.																																																				.	.	.	.	.	.	.
Template SS confidence
		343	.	.	.	.					.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.								.	400	.	.	.	.	.	.	.	.	.	410	.
			393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		N	L	P	E	R	T	L	D	L	A	M	Q	R	L	K	A	F	V	G	E	Y	Y
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions