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Job DescriptionP09053
Confidence99.88%DateThu Jan 5 11:01:50 GMT 2012
Rank200Aligned Residues311
% Identity12%Templated1c4ka2
SCOP infoPLP-dependent transferase-like PLP-dependent transferases Ornithine decarboxylase major domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120.........130.........140.. ......
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Query Sequence  YDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYAD. AGLEED
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Template Sequence  LIHEGPAVAAEKHAARVYN. . . . . . . ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRN. . . . . . NHKSVYNSALAMAG
Template Known Secondary structure  TTTBTTT.......
SSS

TT
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TTTT
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   169170.........180....... ..190.........200.........210.........220. ........230.....
 
   149150.........160.........170.. .......180.........190.........200.........210...
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Query Sequence  LFVSARPNIELLPEGQFKYHVDFE. . . . . . . . . . . . . . . HLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGI
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Template Sequence  GRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG. TYDGTIYN. . . AHEVVKRIGHLCD
Template Known Secondary structure 


TT


GGGS
TTTSST
S

BSSB.
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   236...240.........250.........260.........270.........280.........290 ........ .300.........310.
 
   214.....220.........230.........240. ........250.........260....... ..270.....
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Query Sequence  PLVIDNAYGVPFPGIIFSEARPLWNPNI. . . . . . . . VLCMSLSKLGLPGSRCGIIIANEKII. . . . . . . . . . TAITNMNG
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Template Sequence  YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNL
Template Known Secondary structure 
TT

GGGSSGGGGGG
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TTS

SS

TT

GGGTTSTT


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   312.......320.........330.........340.........350.........360.........370.........380.........390.
 
   276...280.........290.........300.........310.........320......
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Query Sequence  IISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLP. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FMSTSPFYPMYAALDVNAA. . MQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY
Template Known Secondary structure  S
SS

..STT
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STTGGGS
TT
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   392.......400.........410 .........420.........430.........440.........450.........460.........
 
   327..330.........340.........350.........360.........370.........380....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . ENRCLIHKPEGAIFLWLWFKDLPITTKQLYQRLKARGVLMVPGHNFFPGLDKPWPHTH
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Template Sequence  WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP. . . . . . . . . . . . . EKSDL
Template Known Secondary structure  GB

TT
TTT

TT

TT

TT
SSTTTT
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TT


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   470.........480.........490.........500.........510.........520.........530. .....
 
   385....390... ......400.........410..
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Query Sequence  QCMRMNYVP. . EPEKIEAGVKILAEEIERA
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Template Sequence  NSILFLMTPAETPAKMNNLITQLLQLQRLI
Template Known Secondary structure  S

TT

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   537..540.........550.........560......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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