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Job DescriptionP09053
Confidence99.92%DateThu Jan 5 11:01:50 GMT 2012
Rank176Aligned Residues335
% Identity15%Templatec3uwcA_
PDB info PDB header:transferaseChain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  GNPAQIPEMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNGSQSAFFYLFNLF
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Template Sequence  SYLERQFADIEPYLNDLREFIKTA. . . . . . . DFTLGAELEKFEKRFAALH. . . . . . . . NAPHAIGVGTGTDALAXSFKXL
Template Known Secondary structure 

TSS
T.......

SS
T........T
SS
T
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   6...10.........20......... 30.........40........ .50.........60.........70
 
   118.120.........130.........140.........150.........160.........170.........180.........190......
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Query Sequence  . AGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVI
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Template Sequence  NIGAGDE. . . . . . VITCANTFIASVGAIVQAGATPVLVDS. . . . . ENGYVIDPEKIEAAITDKTKAI. . . XPVHYTGNIA
Template Known Secondary structure  T

TT
......SSS
TT

B.....
TTSSB
GGGTGGG

TT...

B
GGG


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   71...... ..80.........90.........100.... .....110.........120...... ...130......
 
   197..200.........210.........220.........230.........240.........250.........260.........270......
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Query Sequence  TDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
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Template Sequence  D. . . XPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQF. . ACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRN
Template Known Secondary structure 
...TT

TT
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TTTTSSSS..
SSSSSS

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TB
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   137 ..140.........150.........160.........170..... ....180.........190.........200.........210.
 
   277 ..280.........290.........300.........310.........320.........330.........340......
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Query Sequence  I. . . . . . . . . . SLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHKPEGAIFLWLWFK
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Template Sequence  HGLINRDVCVEYGINCRXDTIQAVIANRLXNQLETITEKRRGIAHLYDQ. . . . . SFVDLSEFIDVPVRREGVYHVFHIYV
Template Known Secondary structure  TTTTSS


B
B

GGG.....TGGGTTT




TT


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   212.......220.........230.........240.........250.........260 .........270.........280......
 
   347..350.........360.........370.........380.. .......390... ......400.........410
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Query Sequence  DLPITTKQLYQRLKARGVLMVPGHNFFPGLDKPWPH. . . . . . . . . . . . . . THQCMRMNYVP. . EPEKIEAGVKILAEEIE
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Template Sequence  LRVKYRDQLFQYLKDNGIEVKIHYPIAXHLQPAAKSLGYQQGDFPXAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL
Template Known Secondary structure  TTTTB

B
S
SS
GGGSGGGGGG


TTS



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   287..290.........300.........310.........320.........330.........340.........350.........360......
 
   411
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Query Sequence  R
Query Conservation   
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Template Conservation 
Template Sequence  E
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 
   367
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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