Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 54 Aligned Residues 360 % Identity 15% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		I	T	L	L	M	E	D	L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	.	.	.	.	.	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.									.	.														.	.	.	.	.
Template Conservation																																						.	.														.	.	.	.	.
Template Sequence		I	N	N	K	A	N	A	A	I	E	K	Y	G	R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	K	I	I	A	L	P	.	.	S	V	Y	D	R	L	D	E	X	D	R	S	H	.	.	.	.	.	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P
Template Known Secondary structure															G	G	G						S				B		T	T	S		B					.	.								T	S		G	G	G	.	.	.	.	.	T	S	S				T	T															G	G
Template Predicted Secondary structure																																						.	.														.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.			.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D
Query Conservation
Alig confidence						.																													.	.	.	.	.	.
Template Conservation						.																													.	.	.	.	.	.
Template Sequence		Y	K	P	E	.	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L	D	E	G	D	P	.	.	.	.	.	.	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	N	I	D	V	Y	K	E
Template Known Secondary structure		G			S	.	S								S													T	S		S	S			.	.	.	.	.	.					S	S			T										T									B		S	S	S	S	B
Template Predicted Secondary structure						.																													.	.	.	.	.	.
Template SS confidence
		93	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure													.	.																														.	.	.	.	.	.																															.	.
Query SS confidence													.	.																														.	.	.	.	.	.																															.	.
Query Sequence		F	E	H	L	H	I	G	E	E	T	G	.	.	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	.	.	.	.	.	.	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	.	.
Query Conservation													.	.																														.	.	.	.	.	.																															.	.
Alig confidence													.	.																														.	.	.	.	.	.																															.	.
Template Conservation
Template Sequence		A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P
Template Known Secondary structure									S		S									S	S		T	T	T														T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
						241	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.										.															.	.	.	.	.	.	.																																	.	.
Query SS confidence		.	.	.	.										.															.	.	.	.	.	.	.																																	.	.
Query Sequence		.	.	.	.	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	.	.	.	.	.	.	.	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	.	.	N	D	L	L	R	L	S	E	T	V	I
Query Conservation		.	.	.	.										.															.	.	.	.	.	.	.																																	.	.
Alig confidence		.	.	.	.										.															.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L
Template Known Secondary structure		T	T														T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C
Query Conservation
Alig confidence																				.	.	.	.																			.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.																			.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N	.	.	.	.	K	L	T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	.	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	S	A	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																				.	.	.	.	T								S	S	S							S	.	.	.	.											T	T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.																			.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.					.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		387	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		M	R	M	N	Y	V	.	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		I	R	V	A	I	C	G	V	G	E	E	K	I	P	K	L	V	Q	R	L	A	F	Y	T	N	K
Template Known Secondary structure						S	T	T	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions