Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 58 Aligned Residues 363 % Identity 12% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		G	I	T	L	L	M	E	D	L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	.	.	.	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L
Query Conservation																										.	.	.
Alig confidence																										.	.	.																				.	.	.	.	.
Template Conservation																																																.	.	.	.	.
Template Sequence		V	T	A	G	Q	A	Q	A	D	A	K	E	N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	.	.	.	.	.	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F
Template Known Secondary structure																G	G	G						S	S			B		T	T	S		B												T		.	.	.	.	.							S				T	T															G	G	G
Template Predicted Secondary structure																																																.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F
Query Conservation
Alig confidence					.																													.	.	.	.	.	.																												.	.	.	.
Template Conservation					.																													.	.	.	.	.	.																												.	.	.	.
Template Sequence		R	P	E	.	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	.	.	.	.	.	.	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	.	.	.	.	F	D	E	H	N	N	F	N	H	E	A
Template Known Secondary structure				S	.	S								S														S		T	T			.	.	.	.	.	.					S	S			T									T	T								S	.	.	.	.	B		T	T	S	S	B
Template Predicted Secondary structure					.																													.	.	.	.	.	.																												.	.	.	.
Template SS confidence
		95	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160	.	.	.
		172	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																																		.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																																		.	.	.	.	.	.
Query Sequence		E	H	L	H	I	.	.	.	.	.	.	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	.	.	.	.	.	.	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P
Query Conservation							.	.	.	.	.	.																																		.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	N	R	V	N	E	L	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S
Template Known Secondary structure														S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		240							.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.										.															.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.										.															.	.	.	.	.	.	.
Query Sequence		N	.	.	.	.	.	.	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	.	.	.	.	.	.	.	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V
Query Conservation			.	.	.	.	.	.										.															.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.										.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E
Template Known Secondary structure		T			T	T									S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q
Query Conservation
Alig confidence		.																																									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	.	.	.	.	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	L	A	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.																							T								S	S	S							T	.	.	.	.	T											T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																									.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.					.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		386	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		C	M	R	M	N	Y	V	.	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A
Query Conservation									.
Alig confidence		.							.
Template Conservation		.
Template Sequence		.	I	R	I	A	A	C	G	I	P	K	C	Q	X	T	G	L	A	E	K	I	Y	N	A	X	K	S	L
Template Known Secondary structure		.					G	G	G	S						T	T												T
Template Predicted Secondary structure		.
Template SS confidence
			386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions