Job Description P09053 Confidence 99.90% Date Thu Jan 5 11:01:50 GMT 2012 Rank 191 Aligned Residues 316 % Identity 11% Template c3qm2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium Resolution 2.25 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F
Query Conservation
Alig confidence									.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation									.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		V	F	N	F	S	S	G	.	.	.	P	A	M	L	P	A	E	V	L	K	L	A	Q	Q	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	A	E	Q	D	F	R	D	L	L	.	.	.	.	N	I	P	S	N	Y	K	V	L	F	C	H	G	G	G	R	G	Q	F	A
Template Known Secondary structure							S	S	.	.	.	S												T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	T			T	T								S		T	T
Template Predicted Secondary structure									.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.																			.	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P
Query Conservation
Alig confidence																				.	.	.	.	.	.																																		.
Template Conservation																				.	.	.	.	.	.																																		.
Template Sequence		G	V	P	L	N	L	L	G	D	K	T	T	A	D	Y	V	D	A	.	.	.	.	.	.	G	Y	W	A	A	S	A	I	K	E	A	K	K	Y	C	A	P	Q	I	I	D	A	K	I	T	V	D	G	K	R	A	V	K	.	P	M	R	E	W	Q	L	S	D	N	A	A	Y	L	H	Y	C	P	N	E	T	I
Template Known Secondary structure									T	T									S	.	.	.	.	.	.	S											T	T	T	S												T	T						.		G	G	G					T	T		S						S			T	T
Template Predicted Secondary structure																				.	.	.	.	.	.																																		.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T
Query Conservation
Alig confidence											.	.	.	.	.	.	.																												.	.	.	.	.	.	.														.
Template Conservation											.	.	.	.	.	.	.																												.	.	.	.	.	.	.														.
Template Sequence		D	G	I	A	I	D	E	T	P	.	.	.	.	.	.	.	D	F	G	P	E	V	V	V	T	A	D	F	S	S	T	I	L	S	A	P	L	D	V	S	R	Y	G	.	.	.	.	.	.	.	V	I	Y	A	G	A	Q	K	N	I	G	P	A	.	G	L	T	L	V	I	V	R	E	D	L	L	G	K	A	H
Template Known Secondary structure		T	T								.	.	.	.	.	.	.				T	T								T	T	T	T	T	S	S				G	G	G		S	.	.	.	.	.	.	.						T	T	T	T	T			T	.	T								G	G	G		S
Template Predicted Secondary structure											.	.	.	.	.	.	.																												.	.	.	.	.	.	.														.
Template SS confidence
		155	.	.	.	.	160	.	.	.								.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190								.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		272						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.
Predicted Secondary structure			.	.	.	.	.																														.																																				.	.	.
Query SS confidence			.	.	.	.	.																														.																																				.	.	.
Query Sequence		N	.	.	.	.	.	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	.	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	.	.	.	G	A	I	F	L	W
Query Conservation			.	.	.	.	.																														.																																				.	.	.
Alig confidence			.	.	.	.	.																							.	.						.																								.	.	.										.	.	.
Template Conservation																														.	.																														.	.	.
Template Sequence		E	S	C	P	S	I	L	D	Y	T	V	L	N	D	N	P	T	F	A	W	Y	L	S	G	L	V	F	K	.	.	W	L	K	A	Q	G	G	V	A	A	M	H	K	I	N	Q	Q	K	A	E	L	L	Y	G	V	I	D	N	S	.	.	.	D	F	Y	R	N	D	V	A	Q	A	N	R	S	R	M	N	V	P
Template Known Secondary structure		T	T	S		G	G	G											S											.	.						T																						T		.	.	.	S	S					B		G	G	G	B		S	S
Template Predicted Secondary structure																														.	.																														.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	.	.	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation																																																					.	.
Alig confidence							.																							.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation							.																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	L	A	D	.	N	T	L	D	K	V	F	L	E	E	S	F	A	A	G	L	H	A	L	K	G	H	.	.	.	.	.	.	.	.	.	.	.	R	V	V	G	G	M	R	A	S	I	Y	N	A	M	P	I	E	G	V	K	A	L	T	D	F	M	I	D	F	E	R	R
Template Known Secondary structure					S	S	.	G	G	G											T	T					B			.	.	.	.	.	.	.	.	.	.	.	T	T	T		S							T	T	S
Template Predicted Secondary structure							.																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.												.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions