Phyre 2 alignment of P09053 with c3p1tB

Job Description P09053
Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012

Rank 80 Aligned Residues 316

% Identity 20% Template c3p1tB_

PDB info PDB header:transferase Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y
Query Conservation
Alig confidence															.	.													.	.	.	.	.	.								.														.	.	.	.	.	.
Template Conservation															.	.													.	.	.	.	.	.								.														.	.	.	.	.	.
Template Sequence	V	C	L	A	F	N	E	N	P	E	A	V	E	P	.	.	R	V	Q	A	A	I	A	A	A	A	A	R	.	.	.	.	.	.	I	N	R	Y	P	F	D	.	A	E	P	R	V	X	R	K	L	A	E	H	F	.	.	.	.	.	.	S	C	P	E	D	N	L	X	L	V	R	G	I	D	E	C	F	D	R
Template Known Secondary structure				S	S					S					.	.										G	G	G	.	.	.	.	.	.	T	T	S			T	T	.													T	.	.	.	.	.	.	T	S		G	G	G					S
Template Predicted Secondary structure															.	.													.	.	.	.	.	.								.														.	.	.	.	.	.
Template SS confidence
	18	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T
Query Conservation
Alig confidence						.	.					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation						.	.					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence	I	S	A	E	F	.	.	S	S	X	R	.	.	.	.	.	.	F	V	T	A	W	P	G	F	D	G	Y	R	A	R	I	A	V	S	G	L	R	H	F	E	I	G	L	.	.	.	.	.	.	.	T	D	D	L	L	L	D	P	N	D	L	A	Q	V	S	R	D	D	C	V	V	L	A	N	P	S	N	P	T
Template Known Secondary structure					S	.	.	T	T	S		.	.	.	.	.	.					S	S	S		S										T								B	.	.	.	.	.	.	.		T	T	S	S	B						T	T			T	T							S	S		T	T	T
Template Predicted Secondary structure						.	.					.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
	83	.	.	.	.			.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.

	193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T
Query Conservation																																																										.
Alig confidence											.	.	.	.																			.	.	.																							.
Template Conservation											.	.	.	.																			.	.	.
Template Sequence	G	Q	A	L	S	A	G	E	L	D	.	.	.	.	Q	L	R	Q	R	A	G	K	L	L	I	D	E	T	Y	V	D	Y	.	.	.	S	S	F	R	A	R	G	L	A	Y	G	E	N	E	L	V	F	R	S	F	S	K	S	Y	G	L	A	G	L	R	L	G	A	L	F	G	P	S	E	L	I	A	A	X	K
Template Known Secondary structure											.	.	.	.							S							T	T	G	G	G	.	.	.	S	S		S	T	T					B	T	T							S	S	S	T	T	S		T	T	T
Template Predicted Secondary structure											.	.	.	.																			.	.	.
Template SS confidence
	148	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T
Query Conservation
Alig confidence					.	.																		.	.	.	.																											.	.	.	.	.																		.	.	.	.
Template Conservation					.	.																		.	.	.	.																											.	.	.	.	.																		.	.	.	.
Template Sequence	R	K	Q	W	.	.	F	C	N	V	G	T	L	D	L	H	A	L	E	A	A	L	D	.	.	.	.	N	D	R	A	R	E	A	H	I	A	K	T	L	A	Q	R	R	R	V	A	D	A	L	R	G	L	.	.	.	.	.	G	Y	R	V	A	S	S	E	A	N	F	V	L	V	E	N	A	.	.	.	.	A
Template Known Secondary structure	T	T	S		.	.	T	T	S	S													S	.	.	.	.																										T	.	.	.	.	.	T			B				S	S	S							T	.	.	.	.	T
Template Predicted Secondary structure					.	.																		.	.	.	.																											.	.	.	.	.																		.	.	.	.
Template SS confidence
	221	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.					.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.

	352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.												.
Template Conservation																						.	.	.	.	.	.	.	.	.												.
Template Sequence	G	E	R	T	L	R	F	L	R	E	R	G	I	Q	V	K	D	A	G	Q	F	.	.	.	.	.	.	.	.	.	G	L	H	H	H	I	R	I	S	I	G	.	R	E	E	D	N	D	R	L	L	A	A	L	A	E	Y	S	D
Template Known Secondary structure	T										T	T						G	G	G	G	.	.	.	.	.	.	.	.	.	T			S								.																T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.												.
Template SS confidence
	286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.										.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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