Job Description P09053 Confidence 99.83% Date Thu Jan 5 11:01:50 GMT 2012 Rank 218 Aligned Residues 327 % Identity 8% Template c3m5uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Resolution 2.15 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																							.	.	.	.	.																								.
Query SS confidence																																							.	.	.	.	.																								.
Query Sequence		N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	.	.	.	.	.	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	.	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y
Query Conservation																																							.	.	.	.	.																								.
Alig confidence																																							.	.	.	.	.													.	.	.	.	.	.						.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		S	A	G	P	S	T	L	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	.	.	.	.	.	.	E	L	N	D	D	Y	E	V	L	F	L	Q	G	G	A	S	L	Q	F	A
Template Known Secondary structure			S	S	S														T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			.	.	.	.	.	.	T			T	T							S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T
Query Conservation
Alig confidence																.	.	.										.																														.	.	.	.	.	.
Template Conservation																.	.	.										.																														.	.	.	.	.	.
Template Sequence		X	I	P	X	N	L	A	L	N	G	V	C	E	Y	.	.	.	A	N	T	G	V	W	T	K	K	.	A	I	K	E	A	Q	I	L	G	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	R	V	.	.	.	.	.	.	E	F	S	D	N	A	D	Y	A	Y	I	C	S	N	N	T	I	Y
Template Known Secondary structure										S	S					.	.	.				S						.								T	T										T	T	T	T	S		S					.	.	.	.	.	.				T	T	S	S						S			T	T	T
Template Predicted Secondary structure																.	.	.										.																														.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.													.
Template Conservation										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.													.
Template Sequence		G	T	Q	Y	Q	N	Y	P	.	.	.	.	.	.	.	.	.	K	T	K	T	P	L	I	V	D	A	S	S	D	F	F	S	R	K	V	D	F	S	N	I	A	.	.	.	.	.	.	.	L	F	Y	G	G	V	Q	K	N	A	G	I	.	S	G	L	S	C	I	F	I	R	K	D	X	L	E	R	S	K	N
Template Known Secondary structure		T				S	S			.	.	.	.	.	.	.	.	.			S	S							G	G	G	T	T	S	S					T	T			.	.	.	.	.	.	.						T	T	T	T	S	S		.	T	T																T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.													.
Template SS confidence
		151	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
														273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																																	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.										.	.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	.	.	.	N	G	F	Y	K	G	H	A	D	K	K	D	R
Template Known Secondary structure						G	G	G								T	T	T		S	S																			T	T	T																						T	S	.	.	.	T	T	S				S	S		G	G	G	B
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.	290
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	.	.	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A
Query Conservation																																																											.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	X	N	V	S	F	N	I	A	K	N	K	D	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	.	.	.	.	.	.	.	.	.	.	.	R	I	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E	F	X	K	E	F	Q	G	K	Y
Template Known Secondary structure			S	S							S	S		T	T												T	T					B			.	.	.	.	.	.	.	.	.	.	.	T	T	T		S							T	T	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.												.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions