Phyre 2 alignment of P09053 with c3ly1C

Job Description P09053
Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012

Rank 70 Aligned Residues 336

% Identity 19% Template c3ly1C_

PDB info PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	L	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G
Query Conservation
Alig confidence																						.	.													.	.	.	.	.	.					.																	.	.	.	.	.	.
Template Conservation																						.	.													.	.	.	.	.	.					.																	.	.	.	.	.	.
Template Sequence	A	P	S	T	D	N	P	I	R	I	N	F	N	E	N	P	L	G	X	S	P	.	.	K	A	Q	A	A	A	R	D	A	V	V	K	.	.	.	.	.	.	A	N	R	Y	.	A	K	N	E	I	L	X	L	G	N	K	L	A	A	H	H	.	.	.	.	.	.	Q	V	E	A	P	S	I	L	L	T	A	G
Template Known Secondary structure				S	S	S					S	S				S	S					.	.										G	G	G	.	.	.	.	.	.	T	T	S		.																T	.	.	.	.	.	.	T	S		G	G	G					S
Template Predicted Secondary structure																						.	.													.	.	.	.	.	.					.																	.	.	.	.	.	.
Template SS confidence
	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.							.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V
Query Conservation
Alig confidence																			.	.	.	.	.	.																											.	.	.
Template Conservation																			.	.	.	.	.	.																											.	.	.
Template Sequence	S	S	E	G	I	R	A	A	I	E	A	Y	A	S	L	E	A	Q	.	.	.	.	.	.	L	V	I	P	E	L	T	Y	G	D	G	E	H	F	A	K	I	A	G	X	K	V	T	K	V	K	.	.	.	X	L	D	N	W	A	F	D	I	E	G	L	K	A	A	V	A	A	Y	S	G	P	S	I	V	Y	L
Template Known Secondary structure															T	T			.	.	.	.	.	.					S	S	S		T									T	T								.	.	.			T	T	S													T			S
Template Predicted Secondary structure																			.	.	.	.	.	.																											.	.	.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																		.	.	.																			.
Query SS confidence																																																		.	.	.																			.
Query Sequence	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	.	.	.	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	.	P	G	S	R	C	G	I	I	I
Query Conservation																																																		.	.	.																			.
Alig confidence																																.																		.	.	.																			.
Template Conservation																																.
Template Sequence	V	N	P	N	N	P	T	G	T	I	T	P	A	D	V	I	E	P	W	I	A	S	K	P	A	N	T	X	F	I	V	.	D	E	A	Y	A	E	F	V	N	D	P	R	F	R	S	I	S	P	X	I	T	Q	G	A	E	N	I	I	L	L	K	T	F	S	K	I	H	A	X	A	G	X	R	V	G	Y	A	V
Template Known Secondary structure		S	S		T	T	T															T			T	T						.			T	T	G	G	G				T	T				S						T	T		S	S							S	S	S	T	T			G	G	G
Template Predicted Secondary structure																																.
Template SS confidence
	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L
Query Conservation
Alig confidence																																.	.	.	.	.	.																											.	.	.	.					.
Template Conservation																																.	.	.	.	.	.																											.	.	.	.					.
Template Sequence	A	H	P	T	V	I	A	L	X	G	R	Y	V	A	G	E	K	I	N	F	S	G	V	D	A	A	L	A	S	X	N	.	.	.	.	.	.	D	S	A	F	I	T	Y	S	K	K	S	N	D	V	S	R	Q	I	L	L	K	A	L	E	D	L	.	.	.	.	K	L	P	Y	.	L	P	S	E	G	N	F	V
Template Known Secondary structure											T	T	T	T	S	S																.	.	.	.	.	.																											.	.	.	.	T			B	.					S	S
Template Predicted Secondary structure																																.	.	.	.	.	.																											.	.	.	.					.
Template SS confidence
	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.		.	.	330	.	.	.	.	.

	342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation
Alig confidence					.	.	.																									.	.	.	.	.	.	.	.	.	.											.
Template Conservation					.	.	.																									.	.	.	.	.	.	.	.	.	.											.
Template Sequence	F	H	Q	L	.	.	.	V	V	P	L	K	D	Y	Q	T	H	X	A	D	A	G	V	L	I	G	R	A	F	P	P	.	.	.	.	.	.	.	.	.	.	A	D	N	W	C	R	I	S	L	G	.	T	P	Q	E	X	Q	W	V	A	D	T	X	R	E	F	R	K	K
Template Known Secondary structure					.	.	.	S	S												T	T								T	T	.	.	.	.	.	.	.	.	.	.		T	T								.																		T
Template Predicted Secondary structure					.	.	.																									.	.	.	.	.	.	.	.	.	.											.
Template SS confidence
	336	.	.	.				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.											.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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