Job Description P09053 Confidence 99.94% Date Thu Jan 5 11:01:50 GMT 2012 Rank 156 Aligned Residues 337 % Identity 12% Template c3ju7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution Resolution 2.19 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	.	A	G
Query Conservation																																																																															.
Alig confidence																										.	.	.	.						.	.													.	.	.	.	.	.																									.
Template Conservation																										.	.	.	.						.	.													.	.	.	.	.	.
Template Sequence		R	A	S	T	V	P	V	I	E	Y	L	D	E	L	K	E	I	D	A	S	H	I	Y	T	.	.	.	.	N	Y	G	P	I	.	.	N	Q	R	F	E	Q	T	I	X	S	G	F	.	.	.	.	.	.	F	Q	N	R	G	A	V	T	T	V	A	N	A	T	L	G	L	X	A	A	I	Q	L	K	K	R	K
Template Known Secondary structure								G	G	G	T											T			S	.	.	.	.	S	S				.	.												T	.	.	.	.	.	.	S	T	T		S						S														S		T
Template Predicted Secondary structure																										.	.	.	.						.	.													.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E
Query Conservation
Alig confidence											.	.	.	.	.	.																							.	.	.	.																																						.	.
Template Conservation											.	.	.	.	.	.																							.	.	.	.																																						.	.
Template Sequence		K	G	K	Y	A	L	X	P	S	.	.	.	.	.	.	F	T	F	P	A	T	P	L	A	A	I	W	C	G	L	E	P	Y	F	I	D	I	.	.	.	.	S	I	D	D	W	Y	X	D	K	T	V	L	W	D	K	I	E	E	L	K	E	E	V	A	I	V	V	P	Y	A	T	F	G	S	W	X	N	.	.
Template Known Secondary structure		T								S	.	.	.	.	.	.	S	S		T									T	T								B	.	.	.	.		T	T	T		S	B													G	G	G							B		T	T	T	B				.	.
Template Predicted Secondary structure											.	.	.	.	.	.																							.	.	.	.																																						.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.							.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.					.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence		.										.																						.	.																																											.	.	.	.
Template Conservation		.										.																						.	.
Template Sequence		.	L	E	E	Y	E	E	L	E	K	.	K	G	V	P	V	V	V	D	A	A	P	G	F	G	L	X	N	G	G	X	H	.	.	Y	G	Q	D	F	S	G	X	I	I	Y	S	F	H	A	T	P	F	G	I	G	E	G	G	L	I	Y	S	K	N	E	E	D	I	Q	R	I	K	R	X	G	N	F	G	F	D
Template Known Secondary structure		.										.		T			B					T	T		T	T				T	T			.	.	T	T	T	T		S	S							B							B	S							S												T	B	T	T	B
Template Predicted Secondary structure		.										.																						.	.
Template SS confidence
			144	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
							276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.																												.
Template Conservation																																																			.																												.
Template Sequence		T	N	R	E	C	T	X	X	G	F	N	C	K	X	S	E	Y	A	A	A	I	G	I	A	T	X	K	K	W	D	D	K	L	K	E	R	T	R	I	S	E	W	Y	K	Q	L	L	Q	S	.	N	G	L	X	K	K	G	W	Q	L	Q	K	T	E	A	V	I	Q	Q	F	X	P	I	L	C	P	E	.	E	V
Template Known Secondary structure		T	T	S		B		S				B																																							.	T	T	T	T	T	T	T		B					S		B			S	S							T	.	T	S
Template Predicted Secondary structure																																																			.																												.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.													.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.
Query Sequence		T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	.	.	.	.	.	.	.	.	.	.	.	.	Q	C	M	R	M	N	Y	V	P	.	.	E	P	E	K	I	E	A	G	V	K	I	L	A	E
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		R	N	K	Q	V	I	E	D	L	K	K	Q	K	I	E	A	R	L	Y	F	S	P	S	C	H	Q	Q	V	L	F	R	N	Y	K	S	T	D	L	T	R	T	N	K	I	A	K	R	I	V	S	L	P	L	W	E	G	X	T	K	E	I	V	E	Q	I	V	I	C	L	G	Q
Template Known Secondary structure													T	T	B			B		T	T	S	S		G	G	G	S	G	G	G	T	T	S		B	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions