Job Description P09053 Confidence 99.87% Date Thu Jan 5 11:01:50 GMT 2012 Rank 204 Aligned Residues 343 % Identity 14% Template c3i5tB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																	.	.	.	.	.	.																											.	.
Template Conservation												.	.	.	.	.	.	.	.																	.	.	.	.	.	.																											.	.
Template Sequence		W	C	A	Q	V	G	Y	G	R	R	.	.	.	.	.	.	.	.	E	I	V	D	A	M	A	H	Q	A	M	V	L	P	Y	A	.	.	.	.	.	.	S	P	W	Y	M	A	T	S	P	A	A	R	L	A	E	K	I	A	T	L	T	P	G	D	L	N	.	.	R	I	F	F	T	T	G	G	S	T	A	V
Template Known Secondary structure			T		T	T		B				.	.	.	.	.	.	.	.																	.	.	.	.	.	.		T	T	T															T	T	S	S	T	T			.	.						S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																	.	.	.	.	.	.																											.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.
		111	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	L	F	N	L	F	A	.	.	.	.	.	.	.	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.				.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		D	S	A	L	R	F	S	E	F	Y	N	N	V	L	G	R	P	Q	.	.	.	.	.	K	K	R	I	I	V	R	Y	D	G	Y	H	G	S	T	A	L	T	A	A	C	T	G	R	T	G	N	W	P	N	F	D	I	A	Q	D	R	I	S	F	L	S	S	P	N	P	R	H	A	G	N	R	S	Q	E	A	F
Template Known Secondary structure															T	T		T	T	.	.	.	.	.								T	T					S	S						T				G	G	G		T	T	S					T	T									G	G	G		T	T	S
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.																															.
Query SS confidence		.	.	.	.	.	.	.	.	.																										.																															.
Query Sequence		.	.	.	.	.	.	.	.	.	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	.	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	.	F	P	G	I	I	F	S	E	A	R	P	L	W	N
Query Conservation		.	.	.	.	.	.	.	.	.																										.																															.
Alig confidence		.	.	.	.	.	.	.	.	.																										.																															.
Template Conservation
Template Sequence		L	D	D	L	V	Q	E	F	E	D	R	I	E	S	L	G	P	D	T	I	A	A	F	L	A	E	P	I	L	A	S	G	G	V	I	I	P	P	A	G	Y	H	A	R	F	K	A	I	C	E	K	H	D	I	L	Y	I	S	D	E	V	V	T	G	F	G	R	C	G	E	W	F	A	S	E	K	V	F	G	V
Template Known Secondary structure																		G	G	G								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																		.																								.	.	.	.	.	.	.
Query SS confidence																		.																								.	.	.	.	.	.	.
Query Sequence		P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	.	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	.	.	.	.	.	.	.	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y
Query Conservation																		.																								.	.	.	.	.	.	.
Alig confidence							.	.										.																								.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation							.	.																																																										.	.	.	.	.
Template Sequence		V	P	D	I	I	.	.	T	F	A	K	G	V	T	S	G	Y	V	P	L	G	G	L	A	I	S	E	A	V	L	A	R	I	S	G	E	N	A	K	G	S	W	F	T	N	G	Y	T	Y	S	N	Q	P	V	A	C	A	A	A	L	A	N	I	E	.	.	.	.	.	L	M	E	R	E	G	I	V	D	Q	A
Template Known Secondary structure				S			.	.				G	G	G	G	T	T	S	S														T	T	S	G	G	G		T	T								T	T	T	T														.	.	.	.	.					T	T
Template Predicted Secondary structure							.	.																																																										.	.	.	.	.
Template SS confidence
		280	.	.	.	.			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.						.	.	.	.	.	.	.	.	350	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	.	.	.	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	M	A	D	Y	F	A	A	A	L	A	S	L	R	D	L	P	G	V	A	E	T	R	S	V	G	L	V	G	C	V	Q	C	L	L	G	T	A	E	D	K	A	F	T	L	K	I	D	E	R	C	F	E	L	G	L	I	V	R	P	L	G	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C
Template Known Secondary structure														T	T	T	T	S	T	T								T	T																											T	T							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.															.
		388	.			390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		R	M	.	.	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W	A	E
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		V	I	S	P	P	L	I	I	S	R	A	Q	I	D	E	M	V	A	I	M	R	Q	A	I	T	E	V	S	A	A
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions