Return to main results Retrieve Phyre Job Id

Job DescriptionP09053
Confidence99.97%DateThu Jan 5 11:01:50 GMT 2012
Rank95Aligned Residues339
% Identity14%Templatec3hqtB_
PDB info PDB header:transferaseChain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.. .......70.........80.........90.........100.....
Predicted Secondary structure 

















..


















Query SS confidence 


































. .










































Query Sequence  RTPGAIMLGGGNPAQIPEMQDYFQTLLTDMLESGK. . ATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNG
Query Conservation    
  
 
  
 
                      ..       
    
   

 


  
          
 
  
 
Alig confidence 












.




















..
























........









Template Conservation   
   
   

 
.


   
 
  
    
                      

  

   ........
    
   
Template Sequence  ASPDDIILQSNDY. LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT. . . . . . . . GFDECLLSQS
Template Known Secondary structure 

TTS




T.T

TT
S





SBGGGG
STTTS
........T
SS
Template Predicted Secondary structure 









.



















........




Template SS confidence 















































































   37..40......... 50.........60.........70.........80.........90....... ..100.......
 
   106...110.........120.........130.........140.........150.........160.........170.........180 ....
Predicted Secondary structure 





























.
Query SS confidence 










































































.



Query Sequence  SQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELLPEGQFKYHVDFEHLHIGEET. GMIC
Query Conservation   
 

      
   
  
     
    
 
          
                       
        .  
 
Alig confidence 






















......





















..........













.



Template Conservation 
  
      
    

 
    ......             
        .......... 
   
           
 
Template Sequence  GWNANVGLLQTICQPNTNVYIDF. . . . . . FAHMSLWEGARYANAQAHPFMH. . . . . . . . . . NNCDHLRMLIQRHGPGIIV
Template Known Secondary structure 

TT
T......TS
TT

T..........T

S
Template Predicted Secondary structure 







......






..........







Template SS confidence 















































































   108.110.........120.........130 .........140.........150.. .......160.........170.
 
   185....190.........200.........210.........220.........230........ .240.........250.........260.
Predicted Secondary structure 





















...








Query SS confidence 





















































. . .






















Query Sequence  VSRPTNPTGNVITDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLWN. . . PNIVLCMSLSKLGLPGSRCGIII
Query Conservation 
  
 



          
          

 
  
                 ...   
   
 

    
 
 
   
Alig confidence 












...





































...
















..



Template Conservation          
    ...   
  
       



 
   
                                  ..    
Template Sequence  VDSIYSTLGTIAP. . . LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA. . GAIW
Template Known Secondary structure  SB
TTT

B

...TT

TTTBTTBSGGG

TT
GGG
SSSSTT
SS
..
Template Predicted Secondary structure 










...






























..



Template SS confidence 















































































   172.......180.... .....190.........200.........210.........220.........230.........240.. ....
 
   262.......270.........280.........290.........300.........310.........320.........330.........340.
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  ANEKIITAITNMNGIISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHKPEGAIFL
Query Conservation                          
      
                           
   
         
  
   
Alig confidence 






























......

































..






Template Conservation                                 ......                          
       ..       
Template Sequence  CNNEVNRCVPFISYPAIFSSTLLPYEAAGLE. . . . . . TTLEIIESADNRRQHLDRMARKLRIGLSQLGLTI. . RSESQII
Template Known Secondary structure  SSSGGGT
SB


......TTT


..


SS
Template Predicted Secondary structure 



















......




..




Template SS confidence 















































































   247..250.........260.........270....... ..280.........290.........300.........310. .......
 
   342.......350.........360.........370.........380.........390 .........400.........410.
Predicted Secondary structure 























..



Query SS confidence 
















































. .




















Query Sequence  WLWFKDLPITTKQLYQRLKARGVLMVPGHNFFPGLDKPWPHTHQCMRMN. . YVPEPEKIEAGVKILAEEIER
Query Conservation     
         
   
   

 
 

  
              



..     
 
  

 

  

  
Alig confidence 





.























......











..




















Template Conservation   
    .          
   

 
      ......        



     
 



  
  
   
 
Template Sequence  GLETGD. ERNTEKVRDYLESNGVFGSVFCRP. . . . . . ATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY
Template Known Secondary structure  S.TT

TT......SS
TT


TT

Template Predicted Secondary structure 

.





......












Template SS confidence 







































































   319320.... .....330.........340........ .350.........360.........370.........380...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions