Job Description P09053 Confidence 99.89% Date Thu Jan 5 11:01:50 GMT 2012 Rank 195 Aligned Residues 344 % Identity 13% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																											.													.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.																											.													.	.	.	.	.	.
Template Sequence		W	C	V	N	I	G	Y	G	R	D	.	.	.	.	.	.	.	.	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y	N	T	F	F	K	T	T	H	V	P	.	A	I	A	L	A	Q	K	L	A	E	L	A	.	.	.	.	.	.	P	G	D	L	N	H	V	F	F	A	G	G	G	S	E	A	N
Template Known Secondary structure			T		T	T		B				.	.	.	.	.	.	.	.														S				S	S	S	S						.												S	.	.	.	.	.	.		T	T								S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																											.													.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.									.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Y	L	F	N	L	F	A	.	.	.	.	.	.	.	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.				.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.
Template Sequence		D	T	N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	.	.	.	.	.	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A	L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E	G	G	D	M	D	P	E	E	F
Template Known Secondary structure															T	T		T	T	.	.	.	.	.								T	T					S	S							S								T	T				S	S														T	T
Template Predicted Secondary structure																				.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																											.
Query SS confidence		.	.	.	.	.	.	.	.	.																											.
Query Sequence		.	.	.	.	.	.	.	.	.	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	.	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P
Query Conservation		.	.	.	.	.	.	.	.	.																											.
Alig confidence		.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		G	L	A	R	A	R	E	L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P	E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	G	F	G	R	T	G	N	W	F	G	T	Q	T	M	G	I	R
Template Known Secondary structure																		G	G	G								S	S	B	S	T	T	T		B				T	T												T	T								T	T	T	T	T	T	T	T	S	S	S							T
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																	.																							.	.
Query SS confidence																	.																							.	.
Query Sequence		N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	.	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	.	.	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E
Query Conservation																	.																							.	.
Alig confidence						.	.										.																							.	.																			.	.	.	.	.
Template Conservation						.	.																																																					.	.	.	.	.
Template Sequence		P	H	I	M	.	.	T	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	D	E	V	A	H	V	I	G	K	D	E	F	N	H	G	Y	T	Y	S	G	H	P	V	A	A	A	V	A	L	E	N	L	R	.	.	.	.	.	I	L	E	E	E	N	I	L	D	H	V	R	N	V	A	A	P
Template Known Secondary structure			S			.	.				G	G	G	T	T	T	S	S																T	T	S							T	T	T	T														.	.	.	.	.					T	T								T
Template Predicted Secondary structure						.	.																																																					.	.	.	.	.
Template SS confidence
		283	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.						.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.												.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	.	.	.	.	.	.	.	.	.	.	.	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	K	E	K	W	E	A	L	T	D	H	P	L	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I	C	R	E	R	C	F	A	N	N	L	I	M	R	H	V	G	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									G	G	G	G	S	T	T								T	T								S		G	G	G	T			B	S	S		T	T													T	T	B						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		386	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		C	M	R	M	N	.	.	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A	W	A	E
Query Conservation							.	.
Alig confidence		.					.	.
Template Conservation		.
Template Sequence		.	M	I	I	S	P	P	L	V	I	T	P	A	E	I	D	E	M	F	V	R	I	R	K	S	L	D	E	A	Q	A	E
Template Known Secondary structure		.							T	T
Template Predicted Secondary structure		.
Template SS confidence
			423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions