Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 6 Aligned Residues 375 % Identity 16% Template c3g0tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution Resolution 1.75 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		R	H	S	G	I	T	L	L	M	E	D	L	N	D	G	L	.	.	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E
Query Conservation																		.	.
Alig confidence																		.	.															.	.																						.	.	.	.
Template Conservation																																		.	.																						.	.	.	.
Template Sequence		G	X	A	S	I	R	D	L	V	A	L	V	T	N	L	E	K	A	T	G	T	K	F	C	R	X	E	X	G	V	P	G	.	.	L	P	A	P	Q	I	G	I	E	T	E	I	Q	K	L	R	E	G	V	A	S	.	.	.	.	I	Y	P	N	L	D	G	L	P	E	L	K	Q	E	A	S	R	F	A	K	L
Template Known Secondary structure		G	G																		T										S			.	.	S																	T	G	G	G	.	.	.	.	S				T	T
Template Predicted Secondary structure																																		.	.																						.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V
Query Conservation
Alig confidence																																				.	.																															.	.	.
Template Conservation																																				.	.																															.	.	.
Template Sequence		F	V	N	I	D	I	P	A	R	A	C	V	P	T	V	G	S	X	Q	G	C	F	V	S	F	L	V	A	N	R	T	H	K	N	.	.	R	E	Y	G	T	L	F	I	D	P	G	F	N	L	N	K	L	Q	C	R	I	L	G	Q	K	F	E	S	F	D	.	.	.	L	F	E	Y	R	G	E	K	L	R	E
Template Known Secondary structure									G	G	G					S														T	T	S		T	T	.	.		S								S													T								.	.	.	G	G	G	G		T	T
Template Predicted Secondary structure																																				.	.																															.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.									.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.
Query Sequence		D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	.	.	.	.	.	.	.	.	I	F	S	E	A	R	P	L	W	N	P	N	I
Query Conservation																																																													.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	E	S	Y	L	Q	T	G	Q	F	C	S	I	I	Y	S	N	P	N	N	P	T	W	Q	C	X	T	D	E	E	L	R	I	I	G	E	L	A	T	K	H	D	V	I	V	I	E	D	L	A	Y	F	G	X	D	F	R	K	D	Y	S	H	P	G	E	P	L	Y	Q	P	S	V	A	N	Y	T	D	N	Y
Template Known Secondary structure								T	T	T									S	S		T	T	T																			T	T								T	T	T	T			T	T	S				S	T	T	S	S						G	G	G	T		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.																			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	A	L	S	S	S	A	F	S	Y	A	G	Q	R	I	G	V	L	X	I	S	G	K	L	Y	E	R	E	Y	P	D	L	E	E	S	F	G	R	L	R	F	G	E	A	L	S	S	S	A	L	Y	A	L	S	S	G	A	T	H	S	A	Q	W	G	X	A	A	X	L	K	A	C	N	D	G	E	Y	N	F
Template Known Secondary structure											S		G	G	G															B		G	G	G					S		S	B							T	T							S	S	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.								.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.																												.
Query SS confidence																																			.	.	.	.	.	.	.																												.
Query Sequence		T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	.	.	.	.	.	.	.	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	.	V	L	M	V	P	G	H	N	F	F	P	G
Query Conservation																																			.	.	.	.	.	.	.																												.
Alig confidence																						.	.	.	.										.	.	.	.	.	.	.											.	.																.										.	.	.
Template Conservation																						.	.	.	.																											.	.																										.	.	.
Template Sequence		R	D	S	V	I	E	Y	G	R	K	A	R	I	X	K	K	X	F	L	D	.	.	.	.	N	G	F	N	I	V	Y	D	K	D	G	N	E	P	L	A	D	G	F	Y	F	T	V	G	Y	K	.	.	G	X	D	S	S	K	L	I	E	K	F	V	R	Y	G	X	C	A	I	T	L	K	T	T	G	.	.	.
Template Known Secondary structure																					T	.	.	.	.	T	T				S	S				T	T					S	S	S							T	.	.	T													T	T						S	T	T	T	T	.	.	.
Template Predicted Secondary structure																						.	.	.	.																											.	.																										.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	.	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation																				.
Alig confidence		.	.	.	.							.								.
Template Conservation		.	.	.	.							.
Template Sequence		.	.	.	.	S	K	R	N	E	A	.	X	R	I	C	T	S	L	L	P	E	S	Q	F	P	D	L	E	K	R	L	Q	X	L	N	A	E
Template Known Secondary structure		.	.	.	.				T	T		.						S	S	S		G	G	G
Template Predicted Secondary structure		.	.	.	.							.
Template SS confidence
						404	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.