Phyre 2 alignment of P09053 with c3fkdC

Job Description P09053
Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012

Rank 76 Aligned Residues 323

% Identity 21% Template c3fkdC_

PDB info PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F
Query Conservation
Alig confidence							.	.	.																					.	.	.	.	.	.										.												.	.	.	.	.	.
Template Conservation							.	.	.																					.	.	.	.	.	.										.												.	.	.	.	.	.
Template Sequence	I	V	N	F	S	T	.	.	.	T	V	W	T	D	G	D	D	H	L	E	K	H	L	V	E	N	L	N	C	.	.	.	.	.	.	I	R	H	Y	P	E	P	D	A	.	G	T	L	R	Q	X	L	A	K	R	N	.	.	.	.	.	.	S	V	D	N	N	A	I	L	V	T	N	G	P	T	A	A	F	Y
Template Known Secondary structure					S		.	.	.		S															T	G	G	G	.	.	.	.	.	.	G	G	S				T	T		.											T	.	.	.	.	.	.	T			G	G	G					S
Template Predicted Secondary structure							.	.	.																					.	.	.	.	.	.										.												.	.	.	.	.	.
Template SS confidence
	17	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P
Query Conservation
Alig confidence							.	.										.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.										.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	I	A	Q	A	F	.	.	R	G	S	R	S	L	I	A	I	.	.	.	.	.	.	P	S	F	A	E	Y	E	D	A	C	R	X	Y	E	H	E	V	C	F	Y	P	S	N	E	D	I	G	E	A	D	.	.	.	.	.	.	.	.	.	.	.	.	F	S	N	X	D	F	C	W	L	C	N	P	N	N	P
Template Known Secondary structure						T	.	.	T	T								.	.	.	.	.	.	S												T	T								T	T	S		G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.		T	T		S						S	S		T	T
Template Predicted Secondary structure							.	.										.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	82	.	.	.	.	.			.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.													.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

	192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I
Query Conservation																																																											.
Alig confidence														.	.																																												.
Template Conservation														.	.
Template Sequence	D	G	R	L	L	Q	R	T	E	I	L	R	L	.	.	L	N	D	H	P	D	T	T	F	V	L	D	Q	S	Y	V	S	F	T	T	E	E	V	I	R	P	A	D	I	K	G	R	K	N	L	V	X	V	Y	S	F	S	H	A	Y	G	I	P	G	L	R	I	G	Y	I	V	A	N	K	D	F	X	K	R	V
Template Known Secondary structure	T													.	.					T	T	S							T	T	G	G	G		S	S					G	G	G	G	T	T		S	S							S	T	T	T	S	S		G	G	G
Template Predicted Secondary structure														.	.
Template SS confidence
	142	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I
Query Conservation
Alig confidence		.	.																																								.	.	.	.	.	.	.	.																												.
Template Conservation		.	.																																								.	.	.	.	.	.	.	.																												.
Template Sequence	A	.	.	A	F	S	T	P	W	A	V	N	A	L	A	I	E	A	A	K	F	I	L	I	H	P	A	Q	F	T	L	P	I	R	K	W	Q	R	N	T	V	D	.	.	.	.	.	.	.	.	F	I	T	A	L	N	R	L	D	G	V	E	V	H	P	S	G	T	T	F	F	L	L	R	L	K	K	.	G	T
Template Known Secondary structure		.	.	T	T			T	T		S																																.	.	.	.	.	.	.	.								S	T	T							S	S	S							S	S	.	S
Template Predicted Secondary structure		.	.																																								.	.	.	.	.	.	.	.																												.
Template SS confidence
	220			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.									260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.

	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.														.
Template Conservation																							.	.	.	.	.	.	.														.
Template Sequence	A	A	E	L	K	K	Y	X	L	E	E	Y	N	X	L	I	R	D	A	S	N	F	.	.	.	.	.	.	.	R	G	L	D	E	S	Y	V	R	I	T	T	Q	.	R	P	A	Q	N	Q	L	F	I	K	A	L	E	T	F	L	E	K
Template Known Secondary structure											T	T								T	T	S	.	.	.	.	.	.	.	T	T			T	T								.
Template Predicted Secondary structure																							.	.	.	.	.	.	.														.
Template SS confidence
	289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310								.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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