Job Description P09053 Confidence 99.92% Date Thu Jan 5 11:01:50 GMT 2012 Rank 179 Aligned Residues 334 % Identity 12% Template c3dodA_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis Resolution 1.90 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.
Template Conservation												.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.
Template Sequence		W	L	N	V	H	G	H	R	K	K	.	.	.	.	.	.	.	.	E	L	D	D	A	I	K	K	Q	L	G	K	I	A	.	.	.	.	.	.	H	S	T	L	L	G	M	T	N	V	P	A	T	Q	L	A	E	T	L	I	D	I	S	P	.	.	K	K	L	T	R	V	F	Y	S	D	S	G	A	E	A	M
Template Known Secondary structure			T		S	S		B	S			.	.	.	.	.	.	.	.											T	T		S	.	.	.	.	.	.					S	S	S																S		.	.	T	T								S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.															.	.	.	.	.	.																									.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.									.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.
Query Sequence		F	Y	L	F	N	L	F	A	G	.	.	.	.	.	.	.	.	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M
Query Conservation											.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		E	I	A	L	K	M	A	F	Q	Y	W	K	N	I	G	K	P	E	K	Q	K	F	I	A	M	K	S	Y	K	A	P	I	P	.	.	.	.	.	.	.	.	.	.	.	Y	V	Y	R	S	E	S	G	D	P	D	E	C	.	.	R	D	Q	C	L	R	E	L	A	Q	L	L	E	E	H	H	E	E	I	A	A
Template Known Secondary structure															T	T		T	T																.	.	.	.	.	.	.	.	.	.	.			T	T	S	S	S							.	.																G	G	G
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150												.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		183	.	.	.	.	.		.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure								.								.
Query SS confidence								.								.
Query Sequence		I	C	V	S	R	P	.	T	N	P	T	G	N	V	.	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I
Query Conservation								.								.
Alig confidence								.								.																																																								.
Template Conservation																																																																								.
Template Sequence		L	S	I	E	S	M	V	Q	G	A	S	G	M	I	V	M	P	E	G	Y	L	A	G	V	R	E	L	C	T	T	Y	D	V	L	M	I	V	D	E	V	A	T	G	F	G	R	T	G	K	M	F	A	C	E	H	E	N	V	Q	P	D	L	M	A	A	G	K	G	I	T	.	G	G	Y	L	P	I	A	V	T
Template Known Secondary structure						S	S			S	T	T	T						T	T												T	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	G	T				S						G	G	G	G	.	T	T	S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.								.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	.	.	.	.	.	.	.	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																											.	.	.	.	.
Template Sequence		F	A	T	E	D	I	Y	K	A	F	Y	D	D	Y	E	N	L	K	T	F	F	H	G	H	S	Y	T	G	N	Q	L	G	C	A	V	A	L	E	N	L	A	.	.	.	.	.	L	F	E	S	E	N	I	V	E	Q	V	A	E	K	S	K	K	L	H	F	L	L	Q	D	L	H	A	L	P	H	V	G	D	I
Template Known Secondary structure										T	T		S		G	G	G									T	T	T	T														.	.	.	.	.					T	T																				T	T	S	T	T
Template Predicted Secondary structure																																											.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.						.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.											.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	.	.	.	.	.	.	.	.	.	.	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	.	.	Y	V	P	E	P	E	K	I	E	A	G
Query Conservation																				.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence						.														.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation						.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	L	G	.	F	M	C	G	A	E	L	V	R	S	K	E	T	K	E	P	Y	P	A	D	R	R	I	G	Y	K	V	S	L	K	M	R	E	L	G	M	L	T	R	P	L	G	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	F	L	P	P	L	A	S	T	A	E	E	L	S	E	M
Template Known Secondary structure					T	.	T								S	B	T	T	T	T	B				G	G	G													T	T							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure						.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		368	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.															.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	I	L	A	E	E	I	E	R	A	W	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	I	M	K	Q	A	I	H	E	V	T	S
Template Known Secondary structure														T
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions