Job Description P09053 Confidence 99.98% Date Thu Jan 5 11:01:50 GMT 2012 Rank 89 Aligned Residues 356 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	.	.	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S
Query Conservation																																													.	.
Alig confidence												.	.																																.	.																	.	.	.	.	.	.
Template Conservation												.	.																																																		.	.	.	.	.	.
Template Sequence		G	D	G	W	V	H	F	D	A	P	.	.	A	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	.	.	.	.	.	.	N	A	D	P	G	G	V	V	L	G	A	D	R
Template Known Secondary structure		T	S	S					B	G	G	.	.	G																					S	S	S		S	S	S																						.	.	.	.	.	.	T			G	G	G					S
Template Predicted Secondary structure												.	.																																																		.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		Q	S	A	F	F	Y	L	F	N	L	F	.	.	.	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I
Query Conservation													.	.	.
Alig confidence													.	.	.																.	.																							.	.	.	.
Template Conservation																															.	.																							.	.	.	.
Template Sequence		A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	.	.	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	.	.	.	.	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	V
Template Known Secondary structure												T	G	G	G	G	B	T	T							T	T	S		G	.	.	G	G	T											B									.	.	.	.		T	T	T					G	G	G							T	T
Template Predicted Secondary structure																															.	.																							.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N
Query Conservation
Alig confidence																.	.	.																																					.	.	.	.	.																.
Template Conservation																.	.	.																																					.	.	.	.	.																.
Template Sequence		A	V	N	S	A	S	G	T	L	G	G	V	T	D	.	.	.	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	I	R	E	T	D	A	D	.	.	.	.	.	V	V	T	V	N	A	H	A	W	G	G	P	P	I	G	.	A	M	V	F	R	D
Template Known Secondary structure					S	B		T	T	T		B	B			.	.	.											T	T								T	T	T	T	T	T											S	.	.	.	.	.						G	G	G	G	T	S		S			.					S
Template Predicted Secondary structure																.	.	.																																					.	.	.	.	.																.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.
		264	.	.	.	.	.	270	.										.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.									.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		E	K	I	I	T	A	I	T	.	.	.	.	.	.	.	.	.	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	.	.	.	.	.	.	.	.	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P
Query Conservation										.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R
Template Known Secondary structure							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		327	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure				.																																																																		.	.
Query SS confidence				.																																																																		.	.
Query Sequence		E	N	.	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	.	.	E	P	E	K	I	E	A	G	V	K
Query Conservation				.																																																																		.	.
Alig confidence				.																																																																		.	.
Template Conservation
Template Sequence		S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R
Template Known Secondary structure		T		T	T								S	S	B		S							T	T	B												T	T								S								T	T	T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		404	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	A	S
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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