Job Description P09053 Confidence 99.86% Date Thu Jan 5 11:01:50 GMT 2012 Rank 209 Aligned Residues 331 % Identity 14% Template c3bv0A_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 mycobacterium tuberculosis Resolution 2.21 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.															.	.	.	.	.	.																							.	.
Template Conservation									.	.	.	.	.	.	.	.															.	.	.	.	.	.																							.	.
Template Sequence		I	H	G	H	G	H	P	.	.	.	.	.	.	.	.	A	L	D	Q	A	L	T	T	Q	L	R	V	M	N	.	.	.	.	.	.	H	V	M	F	G	G	L	T	H	E	P	A	A	R	L	A	K	L	L	V	D	I	.	.	T	P	A	G	L	D	T	V	F	F	S	D	S	G	S	V	S	V	E	V	A
Template Known Secondary structure		T	T		B	T			.	.	.	.	.	.	.	.														S	.	.	.	.	.	.				S	S	S																	.	.	S	S	T	T								S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.															.	.	.	.	.	.																							.	.
Template SS confidence
		68	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		114	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.															.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	L	F	A	.	.	.	.	.	.	.	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E
Query Conservation							.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.				.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.
Template Sequence		A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	.	.	.	.	.	K	R	R	L	M	T	W	R	G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G	M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E	A	Q
Template Known Secondary structure											T	T	T		T	T	.	.	.	.	.								T	T					S	S					T	T	S		T	T	T	T	T	G	G	G	G	T	T	T	S											S	S
Template Predicted Secondary structure																	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																		.									.
Query SS confidence																		.									.
Query Sequence		H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	.	T	N	P	T	G	N	V	I	.	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L
Query Conservation																		.									.
Alig confidence																		.									.																																																.	.
Template Conservation																																																																											.	.
Template Sequence		L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M	R	F	H	D	P	R	Y	L	H	D	L	R	D	I	C	R	R	Y	E	V	L	L	I	F	D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	.	.	C	V	G	K	A
Template Known Secondary structure						G	G	G								S	S				T	T	T						T														T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S			.	.				G	G
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.
		251	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	L	P	G	S	.	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R
Query Conservation							.
Alig confidence							.																	.	.	.																					.	.	.	.	.																									.
Template Conservation																								.	.	.																					.	.	.	.	.																									.
Template Sequence		L	T	G	G	Y	L	S	L	A	A	T	L	C	T	A	D	V	A	H	T	I	S	.	.	.	A	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E	.	.	.	.	.	L	L	L	G	Q	D	W	R	T	R	I	T	E	L	A	A	G	L	T	A	G	L	D	T	.	A	R	A	L	P
Template Known Secondary structure		G	G	T	T	S	S																	.	.	.				T	T	T	T														.	.	.	.	.				T	T	T																	G	G	.	G	G	G		T
Template Predicted Secondary structure																								.	.	.																					.	.	.	.	.																									.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	.	.	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E
Query Conservation																																																															.	.
Alig confidence																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	T	D	V	R	V	C	G	A	I	G	V	I	E	C	D	R	.	P	V	D	L	A	V	A	T	P	A	A	L	D	R	G	V	W	L	R	P	F	R	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	A	M	P	P	Y	I	C	T	P	A	E	I	T	Q	I	T	S	A	M	V	E
Template Known Secondary structure		T								T	T							S	S	.													T	T	T						B	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																				.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.															.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		408	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	R	L
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions