Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 46 Aligned Residues 371 % Identity 18% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.				.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		M	T	F	S	L	F	G	D	K	F	T	R	H	.	.	.	S	G	I	T	L	L	M	E	D	L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T
Query Conservation															.	.	.
Alig confidence															.	.	.																																		.	.
Template Conservation																																																			.	.
Template Sequence		M	K	R	N	P	H	F	V	S	L	T	K	N	Y	L	F	A	D	L	Q	K	R	V	A	Q	F	R	L	E	N	P	Q	H	T	V	I	N	L	S	I	G	D	T	T	Q	P	L	N	A	.	.	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F	G	L	P
Template Known Secondary structure										T																						T	T	S						S	S										.	.														T	S	S	S								T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I
Query Conservation
Alig confidence																.	.	.																						.													.	.	.	.	.	.																					.	.
Template Conservation																.	.	.																						.													.	.	.	.	.	.																					.	.
Template Sequence		A	L	R	Q	K	L	S	E	D	F	Y	R	G	F	.	.	.	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L	F	R	L	L	S	.	F	F	G	P	N	Q	T	V	A	I	Q	D	.	.	.	.	.	.	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	.	.	L
Template Known Secondary structure										T	T	S	T	T	S	.	.	.	S		G	G	G					S												.				S	S								.	.	.	.	.	.	S												T	T		S					.	.
Template Predicted Secondary structure																.	.	.																						.													.	.	.	.	.	.																					.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.			.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W
Query Conservation
Alig confidence																.	.	.	.	.
Template Conservation																.	.	.	.	.
Template Sequence		P	C	L	Q	E	N	A	F	F	P	E	F	P	E	.	.	.	.	.	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I
Template Known Secondary structure					G	G	G	T	T						T	.	.	.	.	.	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S
Template Predicted Secondary structure																.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
					238	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.													.																	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.													.																	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	N	P	N	I	V	L	C	M	S	L	S	K	.	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	.	.	.	.	.	.	.	.	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V
Query Conservation		.	.	.													.																	.	.	.	.	.	.	.	.
Alig confidence		.	.	.													.																	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		P	D	A	R	F	C	A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	.	.	.	.
Template Known Secondary structure		T	T	G	G	G	T									G	G	G	T	T	T	T										T	T		B		T	T	S		B																															T	T	T				.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	.	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H
Query Conservation																																																							.
Alig confidence		.																		.	.	.	.																																.															.	.	.	.	.	.	.
Template Conservation		.																		.	.	.	.																																															.	.	.	.	.	.	.
Template Sequence		.	I	H	Y	Y	R	E	N	S	D	L	L	R	K	A	L	L	A	.	.	.	.	T	G	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	.	.	.	.	.	.	.	G	R	S	G	S
Template Known Secondary structure		.																		.	.	.	.	T	T							S	S	S	S									T	T			T	T	T										S						G	G	G	G	.	.	.	.	.	.	.		G	G	G	T
Template Predicted Secondary structure		.																		.	.	.	.																																															.	.	.	.	.	.	.
Template SS confidence
			298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360								.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	V	R	F	S	S	L	G	K	R	E	D	I	L	A	A	C	E	R	L	Q
Template Known Secondary structure		T								S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions