Job Description P09053 Confidence 99.93% Date Thu Jan 5 11:01:50 GMT 2012 Rank 168 Aligned Residues 319 % Identity 14% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F
Query Conservation
Alig confidence																									.													.	.	.	.	.	.	.	.
Template Conservation																									.													.	.	.	.	.	.	.	.
Template Sequence		Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	G	N	P	T	.	V	E	Q	F	E	E	M	V	C	S	I	E	.	.	.	.	.	.	.	.	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D	T	L	Y
Template Known Secondary structure									T	T		S	S			S	B	T	T	T					.													.	.	.	.	.	.	.	.	T		S						S	S										T	T	T			T	T							S	S
Template Predicted Secondary structure																									.													.	.	.	.	.	.	.	.
Template SS confidence
		1538	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560		.	.	.	.	.	.	.	.	.	1570	.	.									.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H
Query Conservation
Alig confidence			.	.																							.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Conservation			.	.																							.	.	.	.	.	.	.	.	.	.																																.	.	.
Template Sequence		G	.	.	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	.	.	.	.	.	.	.	.	.	.	S	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	.	.	.	I	K	G	I	A	V	V	C	H	E	R
Template Known Secondary structure			.	.													T	T								T	.	.	.	.	.	.	.	.	.	.	T	S										T	T								S	S		T	T	T						.	.	.
Template Predicted Secondary structure			.	.																							.	.	.	.	.	.	.	.	.	.																																.	.	.
Template SS confidence
		1609			1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.											.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.				.	.	.	.	.	.	.	1670	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.												.	.
Query SS confidence																																										.												.	.
Query Sequence		G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	.	L	P	G	S	R	C	G	I	I	I	A	.	.	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M
Query Conservation																																										.												.	.
Alig confidence																										.	.	.	.	.	.											.												.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		G	A	R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	L	E	L	G	A	D	.	.	.	.	.	.	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L
Template Known Secondary structure		T								T	T	T		T	T	T			G	G	G	G	T		S	.	.	.	.	.	.						T	T	T	T	T	T		S	S	S									S	S
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		1674	.	.	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.							.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.															.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation								.	.	.	.	.	.	.																																																													.
Template Sequence		C	A	R	G	M	K	.	.	.	.	.	.	.	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	.	F	E	A	A	K	K
Template Known Secondary structure							T	.	.	.	.	.	.	.	T																					T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S	.
Template Predicted Secondary structure								.	.	.	.	.	.	.																																																													.
Template SS confidence
		1748	.	1750	.	.	.								.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.		.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.															.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																																							.	.
Template Sequence		L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	.	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure				T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	.	.	S
Template Predicted Secondary structure																																																							.	.
Template SS confidence
		1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.			.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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