Return to main results Retrieve Phyre Job Id

Job DescriptionP09053
Confidence99.88%DateThu Jan 5 11:01:50 GMT 2012
Rank201Aligned Residues340
% Identity15%Templatec3a8uX_
PDB info PDB header:transferaseChain: X: PDB Molecule:omega-amino acid--pyruvate aminotransferase; PDBTitle: crystal structure of omega-amino acid:pyruvate aminotransferase
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100.........110
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  GAIMLGGGNPAQIPEMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIALTNGSQSAF
Query Conservation    
 
  
 
                             
    
   

 


  
          
 
  
 
 
 

Alig confidence 









........















......



















..

















Template Conservation      


  
........ 
  
           ......            


 
   ..       
 
  




 
Template Sequence  WTCGAGHTRK. . . . . . . . EIQEAVAKQLSTLDYS. . . . . . PGFQYGHPLSFQLAEKITDL. . TPGNLNHVFFTDSGSECA
Template Known Secondary structure  T
TT
BS
........TTT
S

......
SSS


TT..SSTTSS
Template Predicted Secondary structure 





........



......






..







Template SS confidence 















































































   60......... 70.........80..... ....90.........100..... ....110.........120...
 
   111........ 120.........130.........140.........150 .........160..
Predicted Secondary structure 
.......











.....................





Query SS confidence 








. . . . . . .






























. . . . . . . . . . . . . . . . . . . . .











Query Sequence  FYLFNLFAG. . . . . . . RRADGRVKKVLFPLAPEYIGYADAGLEEDLF. . . . . . . . . . . . . . . . . . . . . VSARPNIELLPE
Query Conservation        
  ....... 
  
     
    
 
          
  .....................            
Alig confidence 








.......

.....























.....................











Template Conservation    


 
           .....
  

     


        
                                   
Template Sequence  LTAVKMVRAYWRLKGQAT. . . . . KTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPK
Template Known Secondary structure  TT
TT.....

TT



SS


TTT


S
S




GGGTT
SSS
S
Template Predicted Secondary structure 




.....








































Template SS confidence 















































































   124.....130.........140. ........150.........160.........170.........180.........190........
 
   163......170....... ..180.........190... ......200.........210.........220.........230.......
Predicted Secondary structure 







....









.













Query SS confidence 














. . . .















.











































Query Sequence  GQFKYHVDFEHLHIG. . . . EETGMICVSRPTNPTG. NVITDEELLKLDALANQHGIPLVIDNAYGVPFPGIIFSEARPLW
Query Conservation           
     ....     
 
  
 



.          
          

 
  
                
Alig confidence 














....















.











































Template Conservation           

  
        







    
        
  
  
    
 


 


 

 

 
        
Template Sequence  EGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFG
Template Known Secondary structure  SS
GGG
SSBTTTT
B


TTT

TTTTTTTTSSSST
Template Predicted Secondary structure 



































Template SS confidence 















































































   199200.........210.........220.........230.........240.........250.........260.........270........
 
   238.240.........250.... .....260.........270... ......280.........290.........300.......
Predicted Secondary structure 







.


.........








Query SS confidence 
















.


















. . . . . . . . .

































Query Sequence  NPNIVLCMSLSKLGLPG. SRCGIIIANEKIITAITNM. . . . . . . . . NGIISLAPGGIGPAMMCEMIKRNDLLRLSETVIK
Query Conservation      
   
 

    
. 
 
               .........            
      
              
Alig confidence 





..








.


















.........




















.....







Template Conservation 
 


 ..   
 
  
    

      
                    
        


 
 
 .....        
Template Sequence  VTPDLM. . CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC. . . . . LLQKENLV
Template Known Secondary structure 


S..
GGGGTTSS

T
SS
TTS
SS



TTTT
.....TT
Template Predicted Secondary structure 


..
























.....

Template SS confidence 















































































   279280.... .....290.........300.........310.........320.........330.........340... ......350.
 
   308.310.........320.........330.........340.........350. ........360.........370.........380....
Predicted Secondary structure 















...















Query SS confidence 











































. . .
































Query Sequence  PFYYQRVQETIAIIRRYLPENRCLIHKPEGAIFLWLWFKDLPIT. . . TKQLYQRLKARGVLMVPGHNFFPGLDKPWPHTH
Query Conservation               
   
         
  
      
      ...   
   
   

 
 

  
            
Alig confidence 











































...




















............
Template Conservation           
   
  
     
  
 
 
    
                   
   

 
      ............
Template Sequence  QSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGDT. . . . . . . . . . . .
Template Known Secondary structure  TTTTSTTTT

BTTBSST
TT............
Template Predicted Secondary structure 


























............
Template SS confidence 















































































   352.......360.........370.........380.........390.........400.........410.........
 
   385....390 .........400.........410..
Predicted Secondary structure 
..



Query SS confidence 





. .





















Query Sequence  QCMRMN. . YVPEPEKIEAGVKILAEEIERA
Query Conservation    



..     
 
  

 

  

   
Alig confidence  ..



..





















Template Conservation  ..

  
    
 



  
  
   
  
Template Sequence  . . LQFGPTFNSKPQDLDRLFDAVGEVLNKL
Template Known Secondary structure  ..


TT


Template Predicted Secondary structure  ..





Template SS confidence 





























   420.........430.........440.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions