Job Description P09053 Confidence 99.97% Date Thu Jan 5 11:01:50 GMT 2012 Rank 103 Aligned Residues 340 % Identity 13% Template c3a2bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine Resolution 2.30 Å

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		31	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure												.	.	.																																	.	.	.
Query SS confidence												.	.	.																																	.	.	.
Query Sequence		G	A	I	M	L	G	G	G	N	P	.	.	.	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	.	.	.	P	Q	G	K	T	E	L	L	T	L	L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N
Query Conservation												.	.	.																																	.	.	.
Alig confidence												.	.	.																		.	.	.	.	.	.	.	.	.							.	.	.																						.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		R	V	L	M	F	G	S	N	S	Y	L	G	L	T	T	D	T	R	I	I	K	A	A	Q	D	A	L	E	K	Y	.	.	.	.	.	.	.	.	.	G	T	G	C	A	G	S	R	F	L	N	G	T	L	D	I	H	V	E	L	E	E	K	L	S	A	Y	V	G	K	.	.	.	.	E	A	A	I	L	F	S
Template Known Secondary structure							S		S		T	T		G	G	G																.	.	.	.	.	.	.	.	.		S				S	B	T	T	T	T																		T		.	.	.	.	S						S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.										.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E	G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C
Query Conservation
Alig confidence																										.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																						.	.	.	.	.	.
Template Sequence		T	G	F	Q	S	N	L	G	P	L	S	C	L	M	G	R	N	D	Y	I	L	L	D	E	.	.	.	.	.	.	R	D	H	A	S	I	I	D	G	S	R	L	S	F	S	K	V	I	K	Y	G	.	.	.	.	.	.	H	N	N	M	E	D	L	R	A	K	L	S	R	L	P	E	D	S	A	K	L	I	C
Template Known Secondary structure		S												S	S		T	T							T	.	.	.	.	.	.	T												S	S	S							.	.	.	.	.	.	T	T											T	S		S	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.																						.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	.	R	P	L	W	N	P	N	I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N
Query Conservation																																																			.
Alig confidence															.	.	.																																		.
Template Conservation															.	.	.
Template Sequence		T	D	G	I	F	S	M	E	G	D	I	V	N	.	.	.	L	P	E	L	T	S	I	A	N	E	F	D	A	A	V	M	V	D	D	A	H	S	L	G	V	I	G	H	K	G	A	G	T	A	S	H	F	G	L	N	D	D	V	D	L	I	M	G	T	F	S	K	S	L	A	S	L	G	G	F	V	A	G	D
Template Known Secondary structure				S	B		T	T	T			B			.	.	.												T								T	T	T	T	T	T	S	S	G	G	G								T		G	G	G		S						S	S	S	T	T		S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I	I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L
Query Conservation
Alig confidence																															.	.	.	.	.	.																																			.
Template Conservation																															.	.	.	.	.	.																																			.
Template Sequence		A	D	V	I	D	F	L	K	H	N	A	R	S	V	M	F	S	A	S	M	T	P	A	S	V	A	S	T	L	.	.	.	.	.	.	K	A	L	E	I	I	Q	N	E	P	E	H	I	E	K	L	W	K	N	T	D	Y	A	K	A	Q	L	L	D	H	G	F	D	L	.	G	A	T	E	S	P	I	L	P	I
Template Known Secondary structure																	S	S	B												.	.	.	.	.	.										T																				T	T			B	.		S			S	S
Template Predicted Secondary structure																															.	.	.	.	.	.																																			.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.							.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	.	.	V	P	E	P	E	K	I	E	A	G	V	K	I	L	A	E	E	I	E	R	A
Query Conservation																																																		.	.
Alig confidence						.																									.	.	.	.	.	.														.	.
Template Conservation						.																									.	.	.	.	.	.
Template Sequence		F	I	R	S	.	N	E	K	T	F	W	V	T	K	M	L	Q	D	D	G	V	F	V	N	P	V	V	S	P	.	.	.	.	.	.	A	V	P	A	E	E	S	L	I	R	F	S	L	M	A	T	H	T	Y	D	Q	I	D	E	A	I	E	K	M	V	K	V	F	K	Q	A
Template Known Secondary structure						.														T	T								T	T	.	.	.	.	.	.	T	S		G	G	G									T	T
Template Predicted Secondary structure						.																									.	.	.	.	.	.
Template SS confidence
		330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.							.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions