Job Description P09053 Confidence 100.00% Date Thu Jan 5 11:01:50 GMT 2012 Rank 65 Aligned Residues 364 % Identity 19% Template c2z61A_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable aspartate aminotransferase 2; PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	L	F	G	D	K	F	T	R	H	S	G	I	T	L	L	M	E	D	L	N	D	G	L	R	T	P	G	A	I	M	L	G	G	G	N	P	A	Q	I	P	E	M	Q	D	Y	F	Q	T	L	L	T	D	M	L	E	S	G	K	A	T	D	A	L	C	N	Y	D	G	P	Q	G	K	T	E	L	L	T	L
Query Conservation
Alig confidence																																														.	.														.	.	.	.	.
Template Conservation																																														.	.														.	.	.	.	.
Template Sequence		L	S	K	R	L	L	N	F	E	S	F	E	V	M	D	I	L	A	L	A	Q	K	L	E	S	E	G	K	K	V	I	H	L	E	I	G	E	P	D	F	N	T	P	K	.	.	P	I	V	D	E	G	I	K	S	L	K	E	G	.	.	.	.	.	K	T	H	Y	T	D	S	R	G	I	L	E	L	R	E	K
Template Known Secondary structure													T	T													T	T										S		S	S					.	.												T	T	.	.	.	.	.			S				T	T
Template Predicted Secondary structure																																														.	.														.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	M	L	R	E	K	L	G	W	D	I	E	P	Q	N	I	A	L	T	N	G	S	Q	S	A	F	F	Y	L	F	N	L	F	A	G	R	R	A	D	G	R	V	K	K	V	L	F	P	L	A	P	E	Y	I	G	Y	A	D	A	G	L	E	E	D	L	F	V	S	A	R	P	N	I	E	L	L	P	E
Query Conservation
Alig confidence																																											.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Sequence		I	S	E	L	Y	K	D	K	Y	K	A	D	I	I	P	D	N	I	I	I	T	G	G	S	S	L	G	L	F	F	A	L	S	S	I	I	D	D	G	D	E	.	.	.	.	.	.	V	L	I	Q	N	P	C	Y	P	C	Y	K	N	F	I	R	F	L	G	A	K	P	V	F	C	D	.	.	.	.	.	.	.
Template Known Secondary structure										S	S					G	G	G					S	S															T	T			.	.	.	.	.	.					S	S			T									T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.																											.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		G	Q	F	K	Y	H	V	D	F	E	H	L	H	I	G	E	E	T	G	M	I	C	V	S	R	P	T	N	P	T	G	N	V	I	T	D	E	E	L	L	K	L	D	A	L	A	N	Q	H	G	I	P	L	V	I	D	N	A	Y	G	V	P	F	P	G	I	I	F	S	E	A	R	P	L	W	N	P	N	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.																																.	.	.	.																																								.	.
Template Conservation		.	.	.	.																																.	.	.	.
Template Sequence		.	.	.	.	F	T	V	E	S	L	E	E	A	L	S	D	K	T	K	A	I	I	I	N	S	P	S	N	P	L	G	E	V	I	D	.	.	.	.	R	E	I	Y	E	F	A	Y	E	N	I	P	Y	I	I	S	D	E	I	Y	N	G	L	V	Y	E	G	K	C	Y	S	A	I	E	F	D	E	N	L	E	K
Template Known Secondary structure		.	.	.	.	S	S										S	S								S	S		T	T	T						.	.	.	.												S							T	T	T	T		B	S	S	S					G	G	G	T		T	T		S	S
Template Predicted Secondary structure		.	.	.	.																																.	.	.	.
Template SS confidence
						142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	L	C	M	S	L	S	K	L	G	L	P	G	S	R	C	G	I	I	I	A	N	E	K	I	I	T	A	I	T	N	M	N	G	I	I	S	L	A	P	G	G	I	G	P	A	M	M	C	E	M	I	K	R	N	D	L	L	R	L	S	E	T	V	I	K	P	F	Y	Y	Q	R	V	Q	E	T	I	A	I
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		T	I	L	I	N	G	F	S	L	Y	A	M	T	G	W	R	I	G	Y	V	I	S	N	D	E	I	I	E	A	I	L	K	L	Q	Q	N	L	F	I	S	A	P	T	I	S	Q	Y	A	A	L	K	A	F	E	.	.	K	E	T	E	R	E	I	N	S	M	I	K	E	F	D	R	R	R	R	L	V	L	K	Y
Template Known Secondary structure														G	G	G																							T	S	S	S									G	G	G	G	S	.	.
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	R	Y	L	P	E	N	R	C	L	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	T	T	K	Q	L	Y	Q	R	L	K	A	R	G	V	L	M	V	P	G	H	N	F	F	P	G	L	D	K	P	W	P	H	T	H	Q	C	M	R	M	N	Y	V	P	E	P	E	K	I	E	A
Query Conservation
Alig confidence					.	.	.	.																						.	.																							.	.	.	.	.	.	.
Template Conservation					.	.	.	.																						.	.																							.	.	.	.	.	.	.
Template Sequence		V	K	D	.	.	.	.	F	G	W	E	V	N	N	P	I	G	A	Y	Y	V	F	P	N	I	G	E	D	.	.	G	R	E	F	A	Y	K	L	L	K	E	K	F	V	A	L	T	P	G	I	G	F	.	.	.	.	.	.	.	G	S	K	G	K	N	Y	I	R	I	S	Y	A	N	S	Y	E	N	I	K	E
Template Known Secondary structure					.	.	.	.	T	T		B						B	T	T					B		S	S		.	.																			G	G	G	G	.	.	.	.	.	.	.		G	G	G	S	S	B							S
Template Predicted Secondary structure					.	.	.	.																						.	.																							.	.	.	.	.	.	.
Template SS confidence
		293	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.								.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	K	I	L	A	E	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	E	R	I	K	E	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions